Andreas Tille pushed to branch upstream at Debian Med / ecopcr
Commits:
b37f9f80 by Andreas Tille at 2019-01-26T10:16:20Z
New upstream version 1.0.1+dfsg
- - - - -
2 changed files:
- VERSION
- src/ecopcr.c
Changes:
=====================================
VERSION
=====================================
@@ -1 +1 @@
-0.8.0
+1.0.0
=====================================
src/ecopcr.c
=====================================
@@ -6,7 +6,7 @@
#include <getopt.h>
-#define VERSION "1.0.0"
+#define VERSION "1.0.1"
/* ----------------------------------------------- */
@@ -610,13 +610,12 @@ int main(int argc, char **argv)
{
posj+=o2c->patlen;
// printf("coucou %d %d %d\n",posi,posj,apatseq->seqlen);
-
errj =apatseq->hiterr[1]->val[j];
+
errj = apatseq->hiterr[1]->val[j];
length = 0;
if (posj > posi)
length = posj - posi - o1->patlen - o2->patlen;
if (posj < posi)
-
//length = posj + apatseq->seqlen - posi - o1->patlen - o2->patlen;
// TODO
-
length = posi - posj - o1->patlen - o2->patlen;
+
length = posj + apatseq->seqlen - posi - o1->patlen - o2->patlen;
if ((length>0) && // For when primers touch or overlap
(!lmin || (length >= lmin)) &&
(!lmax || (length <= lmax)))
@@ -668,11 +667,9 @@ int main(int argc, char **argv)
length = 0;
if (posj > posi)
-
//length = posj - posi + 1 - o2->patlen - o1->patlen; /* - o1->patlen
: deleted by <EC> (prior to the OBITools3) */ TODO ????
-
length = posj - posi - o2->patlen - o1->patlen;
+
length = posj - posi + 1 - o2->patlen - o1->patlen; /* - o1->patlen :
deleted by <EC> (prior to the OBITools3) */
if (posj < posi)
-
//length = posj + apatseq->seqlen - posi - o1->patlen - o2->patlen;
TODO ????
-
length = posi - posj - o2->patlen - o1->patlen;
+
length = posj + apatseq->seqlen - posi - o1->patlen - o2->patlen;
if ((length>0) && // For when primers touch or overlap
(!lmin || (length >= lmin)) &&
(!lmax || (length <= lmax)))
View it on GitLab:
https://salsa.debian.org/med-team/ecopcr/commit/b37f9f805e4d928bf0bd7257d95dd7493130edff
--
View it on GitLab:
https://salsa.debian.org/med-team/ecopcr/commit/b37f9f805e4d928bf0bd7257d95dd7493130edff
You're receiving this email because of your account on salsa.debian.org.
_______________________________________________
debian-med-commit mailing list
[email protected]
https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
