Andreas Tille pushed to branch master at Debian Med / biobambam2
Commits: d734baa7 by Andreas Tille at 2019-04-13T04:36:28Z d/copyright - - - - - faca6604 by Andreas Tille at 2019-04-13T05:06:03Z Remove currently unused autopkgtest template - - - - - eaba3e38 by Andreas Tille at 2019-04-13T05:15:59Z Upload to new - - - - - 5 changed files: - − debian/README.test - debian/changelog - debian/copyright - − debian/tests/control - − debian/tests/run-unit-test Changes: ===================================== debian/README.test deleted ===================================== @@ -1,8 +0,0 @@ -Notes on how this package can be tested. -──────────────────────────────────────── - -This package can be tested by running the provided test: - - sh run-unit-test - -in order to confirm its integrity. ===================================== debian/changelog ===================================== @@ -1,6 +1,5 @@ -biobambam2 (2.0.95-1) UNRELEASED; urgency=medium +biobambam2 (2.0.95-1) unstable; urgency=medium - * Initial release (Closes: #<bug>) - TODO: https://salsa.debian.org/med-team/libmaus2 + * Initial release (Closes: #926978) - -- Andreas Tille <[email protected]> Fri, 12 Apr 2019 10:26:19 +0200 + -- Andreas Tille <[email protected]> Sat, 13 Apr 2019 07:15:32 +0200 ===================================== debian/copyright ===================================== @@ -3,9 +3,60 @@ Upstream-Name: biobambam2 Source: https://gitlab.com/german.tischler/biobambam2/tags Files: * -Copyright: 20xx-20yy <upstream> -License: <license> +Copyright: 2013-2019 German Tischler <[email protected]> + 2011-2016 Genome Research Limited +License: GPL-3+ + +Files: src/biobambam2/ClipAdapters* +Copyright: 2008, 2009, 2013-2014 Heng Li <[email protected]>, Genome Research Ltd + 2010, 2012, 2013 Heng Li <[email protected]>, Broad Institute + 2013 German Tischler + 2013, 2015 Genome Research Limited +License: MIT+GPL-3+ + On Debian systems you can find the full text of the GNU General Public + License version 3 at /usr/share/common-licenses/GPL-3. + . + Cigar type code taken from htslib/sam.h copyright by Heng Li under the + MIT/Expat License as follows: + . + Permission is hereby granted, free of charge, to any person obtaining a copy + of this software and associated documentation files (the "Software"), to deal + in the Software without restriction, including without limitation the rights + to use, copy, modify, merge, publish, distribute, sublicense, and/or sell + copies of the Software, and to permit persons to whom the Software is + furnished to do so, subject to the following conditions: + . + The above copyright notice and this permission notice shall be included in + all copies or substantial portions of the Software. + . + THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR + IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, + FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL + THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER + LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING + FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER + DEALINGS IN THE SOFTWARE + +Files: src/programs/bamseqchksum* +Copyright: 2014-2014 David K. Jackson + 2009-2016 German Tischler + 2011-2014 Genome Research Limited +License: GPL-3+ Files: debian/* Copyright: 2019 Andreas Tille <[email protected]> -License: <license> +License: GPL-3+ + +License: GPL-3+ + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + . + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + . + On Debian systems you can find the full text of the GNU General Public + License version 3 at /usr/share/common-licenses/GPL-3. ===================================== debian/tests/control deleted ===================================== @@ -1,3 +0,0 @@ -Tests: run-unit-test -Depends: @ -Restrictions: allow-stderr ===================================== debian/tests/run-unit-test deleted ===================================== @@ -1,18 +0,0 @@ -#!/bin/bash -set -e - -pkg=#PACKAGENAME# - -if [ "${AUTOPKGTEST_TMP}" = "" ] ; then - AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX) - # Double quote below to expand the temporary directory variable now versus - # later is on purpose. - # shellcheck disable=SC2064 - trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM -fi - -cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}" - -cd "${AUTOPKGTEST_TMP}" - -#do_stuff_to_test_package# View it on GitLab: https://salsa.debian.org/med-team/biobambam2/compare/19d8f4482e5c25eb1f719eab29aaf5307b3d5749...eaba3e38949d12b38571f2fafcbffeff5ed1d27e -- View it on GitLab: https://salsa.debian.org/med-team/biobambam2/compare/19d8f4482e5c25eb1f719eab29aaf5307b3d5749...eaba3e38949d12b38571f2fafcbffeff5ed1d27e You're receiving this email because of your account on salsa.debian.org.
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