Andreas Tille pushed to branch master at Debian Med / bcbio
Commits: be590c25 by Andreas Tille at 2019-04-13T17:52:47Z Update TODO - - - - - da671698 by Andreas Tille at 2019-04-14T04:26:42Z https://github.com/indraniel/OptiType is just a fork of an old version of optitype - - - - - 1 changed file: - debian/TODO Changes: ===================================== debian/TODO ===================================== @@ -12,6 +12,7 @@ package umis package mosdepth https://salsa.debian.org/med-team/mosdepth + several nim libraries would be needed package qsignature https://sourceforge.net/p/adamajava/wiki/Home/ @@ -20,16 +21,13 @@ http://sourceforge.net/projects/adamajava/files/qsignature.tar.bz2/download https://sourceforge.net/p/adamajava/code/HEAD/tree/trunk/adamajava/qsignature/ package optitype -https://github.com/FRED-2/OptiType + https://salsa.debian.org/med-team/optitype (rudimentary) package vcfanno https://github.com/brentp/vcfanno Now at https://github.com/AdamaJava/adamajava -Package OptiTypePipeline - https://github.com/indraniel/OptiType ?? - add hisat2_extract_splice_sites.py to the hisat2 package -> Done in Git in preparation for 2.1.0-3 View it on GitLab: https://salsa.debian.org/med-team/bcbio/compare/5c3c0fc06a6babaddcf333af6a047d0f176c18e2...da6716984c75348e92aab043a53eca28ffcb4112 -- View it on GitLab: https://salsa.debian.org/med-team/bcbio/compare/5c3c0fc06a6babaddcf333af6a047d0f176c18e2...da6716984c75348e92aab043a53eca28ffcb4112 You're receiving this email because of your account on salsa.debian.org.
_______________________________________________ debian-med-commit mailing list [email protected] https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
