Andreas Tille pushed to branch master at Debian Med / libvcflib
Commits: 51c0f5a9 by Andreas Tille at 2019-07-31T14:06:15Z Move vcf2tsv and vcfkeepinfo to /usr/bin since it is needed by freebayes test - - - - - adfd2325 by Andreas Tille at 2019-07-31T14:06:35Z debhelper-compat 12 - - - - - b9aa3923 by Andreas Tille at 2019-07-31T14:06:40Z Standards-Version: 4.4.0 - - - - - 3fdb666d by Andreas Tille at 2019-07-31T14:07:10Z Respect DEB_BUILD_OPTIONS in override_dh_auto_test target - - - - - 4a0e02cb by Andreas Tille at 2019-07-31T14:07:10Z Remove trailing whitespace in debian/control - - - - - b63dc7e2 by Andreas Tille at 2019-07-31T14:11:35Z Fix typo - - - - - 88e68af8 by Andreas Tille at 2019-07-31T14:12:33Z Override dh_dwz to do nothing - - - - - b851032b by Andreas Tille at 2019-07-31T14:15:25Z Upload to unstable - - - - - 5 changed files: - debian/changelog - − debian/compat - debian/control - debian/libvcflib-tools.install - debian/rules Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,15 @@ +libvcflib (1.0.0~rc2+dfsg-3) unstable; urgency=medium + + * Move vcf2tsv and vcfkeepinfo to /usr/bin since it is needed by freebayes + test + * debhelper-compat 12 + * Standards-Version: 4.4.0 + * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target + * Remove trailing whitespace in debian/control + * Override dh_dwz to do nothing + + -- Andreas Tille <[email protected]> Wed, 31 Jul 2019 16:12:42 +0200 + libvcflib (1.0.0~rc2+dfsg-2) unstable; urgency=medium * Add libfastahack to pkg-config input file ===================================== debian/compat deleted ===================================== @@ -1 +0,0 @@ -11 ===================================== debian/control ===================================== @@ -3,7 +3,7 @@ Maintainer: Debian Med Packaging Team <[email protected]. Uploaders: Andreas Tille <[email protected]> Section: science Priority: optional -Build-Depends: debhelper (>= 11~), +Build-Depends: debhelper-compat (= 12), dh-exec, python-markdown, libtabixpp-dev, @@ -14,7 +14,7 @@ Build-Depends: debhelper (>= 11~), libfastahack-dev (>= 0.0+git20160702.bbc645f+dfsg-5~), pkg-config, libipc-run3-perl -Standards-Version: 4.2.1 +Standards-Version: 4.4.0 Vcs-Browser: https://salsa.debian.org/med-team/libvcflib Vcs-Git: https://salsa.debian.org/med-team/libvcflib.git Homepage: https://github.com/ekg/vcflib @@ -30,7 +30,7 @@ Description: C++ library for parsing and manipulating VCF files individuals. VCF provides a common interchange format for the description of variation in individuals and populations of samples, and has become the defacto standard reporting format for a wide array of genomic variant detectors. - . + . vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. It is both: . @@ -56,7 +56,7 @@ Description: C++ library for parsing and manipulating VCF files (development) individuals. VCF provides a common interchange format for the description of variation in individuals and populations of samples, and has become the defacto standard reporting format for a wide array of genomic variant detectors. - . + . vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. It is both: . @@ -83,7 +83,7 @@ Description: C++ library for parsing and manipulating VCF files (tools) individuals. VCF provides a common interchange format for the description of variation in individuals and populations of samples, and has become the defacto standard reporting format for a wide array of genomic variant detectors. - . + . vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. It is both: . ===================================== debian/libvcflib-tools.install ===================================== @@ -1,3 +1,5 @@ +binaries/vcfkeepinfo usr/bin +binaries/vcf2tsv usr/bin binaries/*.R usr/lib/R/site-library/vcflib binaries usr/lib/vcflib debian/wrapper/* usr/bin ===================================== debian/rules ===================================== @@ -16,7 +16,9 @@ override_dh_auto_build: markdown_py -f README.html README.md override_dh_auto_test: +ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS))) export LD_LIBRARY_PATH=$(CURDIR)/lib/:$LD_LIBRARY_PATH dh_auto_test +endif override_dh_install: dh_install @@ -36,3 +38,6 @@ override_dh_install: override_dh_fixperms: dh_fixperms chmod -x debian/*/usr/lib/R/site-library/*/*.R + +override_dh_dwz: + echo "Do nothing here" View it on GitLab: https://salsa.debian.org/med-team/libvcflib/compare/db939ff0801681098f6d3714274c2d3196dc084a...b851032bd81e1aa643fcfb860998e505682e525f -- View it on GitLab: https://salsa.debian.org/med-team/libvcflib/compare/db939ff0801681098f6d3714274c2d3196dc084a...b851032bd81e1aa643fcfb860998e505682e525f You're receiving this email because of your account on salsa.debian.org.
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