Andreas Tille pushed to branch master at Debian Med / python-bx
Commits: 62e5027f by Andreas Tille at 2019-08-01T07:40:03Z Breaks: python3-bx-tools - - - - - 2d720d2e by Andreas Tille at 2019-08-01T07:40:20Z debhelper-compat 12 - - - - - 0dd8331a by Andreas Tille at 2019-08-01T07:43:27Z Point Vcs fields to salsa.debian.org - - - - - 3de8d319 by Andreas Tille at 2019-08-01T07:43:27Z Standards-Version: 4.4.0 - - - - - a6986346 by Andreas Tille at 2019-08-01T07:43:27Z Testsuite: autopkgtest-pkg-python - - - - - 11f6429f by Andreas Tille at 2019-08-01T07:43:28Z Secure URI in copyright format - - - - - 97bf7880 by Andreas Tille at 2019-08-01T07:43:28Z Remove trailing whitespace in debian/copyright - - - - - 08accd14 by Andreas Tille at 2019-08-01T07:53:57Z Fix license name - - - - - 447090da by Andreas Tille at 2019-08-01T07:55:15Z hardening=+all - - - - - 060899b9 by Andreas Tille at 2019-08-01T07:59:10Z Upload to unstable - - - - - 5 changed files: - debian/changelog - − debian/compat - debian/control - debian/copyright - debian/rules Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,19 @@ +python-bx (0.8.4-2) unstable; urgency=medium + + * Team upload. + * Breaks: python3-bx-tools + Closes: #933596 + * debhelper-compat 12 + * Point Vcs fields to salsa.debian.org + * Standards-Version: 4.4.0 + * Testsuite: autopkgtest-pkg-python + * Secure URI in copyright format + * Remove trailing whitespace in debian/copyright + * Fix license name + * hardening=+all + + -- Andreas Tille <[email protected]> Thu, 01 Aug 2019 09:55:20 +0200 + python-bx (0.8.4-1) unstable; urgency=medium * New upstream release. Removed Python2 binary packages; enabled the tests ===================================== debian/compat deleted ===================================== @@ -1 +0,0 @@ -9 ===================================== debian/control ===================================== @@ -1,33 +1,34 @@ Source: python-bx -Section: python -Priority: optional Maintainer: Debian Med Packaging Team <[email protected]> Uploaders: Steffen Moeller <[email protected]>, Michael Crusoe <[email protected]> -Build-Depends: - debhelper (>= 9), - dh-python, - zlib1g-dev, - python3-setuptools, - python3-all-dev, - python3-lzo, - python3-nose, - python3-numpy, - python3-six, - cython3 -Standards-Version: 4.2.1 -Homepage: https://github.com/bxlab/bx-python -Vcs-Git: https://salsa.debian.org/med-team/python-bx.git +Section: python +Testsuite: autopkgtest-pkg-python +Priority: optional +Build-Depends: debhelper-compat (= 12), + dh-python, + zlib1g-dev, + python3-setuptools, + python3-all-dev, + python3-lzo, + python3-nose, + python3-numpy, + python3-six, + cython3 +Standards-Version: 4.4.0 Vcs-Browser: https://salsa.debian.org/med-team/python-bx +Vcs-Git: https://salsa.debian.org/med-team/python-bx.git +Homepage: https://github.com/bxlab/bx-python Package: python3-bx Architecture: any Depends: python3-lzo, - ${shlibs:Depends}, + ${shlibs:Depends}, ${misc:Depends}, - ${python3:Depends}, -Replaces: python3-bx-tools + ${python3:Depends} +Breaks: python3-bx-tools Provides: python3-bx-tools +Replaces: python3-bx-tools Description: library to manage genomic data and its alignment The bx-python project is a python library and associated set of scripts to allow for rapid implementation of genome scale analyses. The library contains ===================================== debian/copyright ===================================== @@ -1,9 +1,9 @@ -Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: bx-python Source: https://github.com/bxlab/bx-python -# Update the list of files to exclude by +# Update the list of files to exclude by # grep -rl "Generated by Cython" -Files-Excluded: lib/bx/bbi/bbi_file.h lib/bx/_seqmapping.c lib/bx/bitset.c lib/bx/pwm/_position_weight_matrix.c lib/bx/motif/_pwm.c lib/bx/bbi/cirtree_file.c lib/bx/bbi/bbi_file.c lib/bx/bbi/bpt_file.c lib/bx/bbi/bigwig_file.c lib/bx/bbi/bigbed_file.c lib/bx/intseq/ngramcount.c lib/bx/seq/_twobit.c lib/bx/seq/_nib.c lib/bx/intervals/cluster.c lib/bx/intervals/intersection.c lib/bx/misc/_seekbzip2.c lib/bx/misc/bgzf.c lib/bx/arrays/wiggle.c lib/bx/arrays/bed.c lib/bx/arrays/array_tree.c lib/bx/align/_epo.c lib/bx/align/_core.c lib/bx/align/sitemask/_cpg.c +Files-Excluded: lib/bx/bbi/bbi_file.h lib/bx/_seqmapping.c lib/bx/bitset.c lib/bx/pwm/_position_weight_matrix.c lib/bx/motif/_pwm.c lib/bx/bbi/cirtree_file.c lib/bx/bbi/bbi_file.c lib/bx/bbi/bpt_file.c lib/bx/bbi/bigwig_file.c lib/bx/bbi/bigbed_file.c lib/bx/intseq/ngramcount.c lib/bx/seq/_twobit.c lib/bx/seq/_nib.c lib/bx/intervals/cluster.c lib/bx/intervals/intersection.c lib/bx/misc/_seekbzip2.c lib/bx/misc/bgzf.c lib/bx/arrays/wiggle.c lib/bx/arrays/bed.c lib/bx/arrays/array_tree.c lib/bx/align/_epo.c lib/bx/align/_core.c lib/bx/align/sitemask/_cpg.c Files: * Copyright: 2005-2015 The Pennsylvania State University @@ -46,11 +46,11 @@ License: MIT OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY - CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, - TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE + CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, + TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. -License: GPL-2.0 +License: GPL-2 This package is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation version 2 of the License. ===================================== debian/rules ===================================== @@ -9,6 +9,8 @@ export NOSE_VERBOSE=2 export PYBUILD_NAME=bx-python export PYBUILD_BEFORE_TEST=cp -r {dir}/test_data {build_dir}/ +export DEB_BUILD_MAINT_OPTIONS=hardening=+all + %: dh $@ --with python3 --buildsystem=pybuild View it on GitLab: https://salsa.debian.org/med-team/python-bx/compare/8ba7414e6c63650488dd76a932e6e4b3f10bc006...060899b9699258d4e5fa0e4bddb3c007378f4202 -- View it on GitLab: https://salsa.debian.org/med-team/python-bx/compare/8ba7414e6c63650488dd76a932e6e4b3f10bc006...060899b9699258d4e5fa0e4bddb3c007378f4202 You're receiving this email because of your account on salsa.debian.org.
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