Andreas Tille pushed to branch upstream at Debian Med / virulencefinder
Commits: 9c83e55a by Andreas Tille at 2019-09-02T07:37:53Z New upstream version 0.0+git20190809.dde157a - - - - - 683e5a79 by Andreas Tille at 2019-09-02T07:54:36Z New upstream version 2.0.3+git20190809.dde157a - - - - - 2 changed files: - Dockerfile - README.md Changes: ===================================== Dockerfile ===================================== @@ -17,7 +17,7 @@ RUN apt-get update -qq; \ ENV DEBIAN_FRONTEND Teletype # Install python dependencies -RUN pip3 install -U biopython tabulate cgecore==1.4.2; +RUN pip3 install -U biopython==1.73 tabulate cgecore==1.4.2; # Install kma RUN git clone --branch 1.0.1 --depth 1 https://bitbucket.org/genomicepidemiology/kma.git; \ ===================================== README.md ===================================== @@ -21,7 +21,8 @@ isolates of bacteria - at the moment only E. coli, Enterococcus, S. aureus and L ## Installation -Setting up VirulenceFinder program +Setting up VirulenceFinder program +**Warning:** Due to bugs in BioPython 1.74, if you are not using the Docker container, do not use that version if not using Python 3.7. ```bash # Go to wanted location for virulencefinder cd /path/to/some/dir View it on GitLab: https://salsa.debian.org/med-team/virulencefinder/compare/79496ec401dacff79a9ae04bb70cea9dfc440224...683e5a79e0887aee5a634722b7304e2d49322338 -- View it on GitLab: https://salsa.debian.org/med-team/virulencefinder/compare/79496ec401dacff79a9ae04bb70cea9dfc440224...683e5a79e0887aee5a634722b7304e2d49322338 You're receiving this email because of your account on salsa.debian.org.
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