Andreas Tille pushed to branch master at Debian Med / python-pyfaidx
Commits: 0bd5d49e by Andreas Tille at 2019-09-02T12:38:58Z Drop Python2 support - - - - - bfb57168 by Andreas Tille at 2019-09-02T12:39:15Z debhelper-compat 12 - - - - - 12299f9d by Andreas Tille at 2019-09-02T12:39:17Z Standards-Version: 4.4.0 - - - - - 86b7fa37 by Andreas Tille at 2019-09-02T12:39:40Z Respect DEB_BUILD_OPTIONS in override_dh_auto_test target - - - - - 8d6959e6 by Andreas Tille at 2019-09-02T12:41:07Z Upload to unstable - - - - - 4 changed files: - debian/changelog - − debian/compat - debian/control - debian/rules Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,13 @@ +python-pyfaidx (0.5.5.2-2) unstable; urgency=medium + + * Drop Python2 support + Closes: #938064 + * debhelper-compat 12 + * Standards-Version: 4.4.0 + * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target + + -- Andreas Tille <[email protected]> Mon, 02 Sep 2019 14:39:41 +0200 + python-pyfaidx (0.5.5.2-1) unstable; urgency=medium * New upstream version ===================================== debian/compat deleted ===================================== @@ -1 +0,0 @@ -11 ===================================== debian/control ===================================== @@ -4,15 +4,8 @@ Uploaders: Andreas Tille <[email protected]> Section: python Testsuite: autopkgtest-pkg-python Priority: optional -Build-Depends: debhelper (>= 11~), +Build-Depends: debhelper-compat (= 12), dh-python, - python-all, - python-coverage, - python-setuptools, - python-nose, - python-numpy, - python-six, - python-mock, python3-all, python3-coverage, python3-setuptools, @@ -20,28 +13,11 @@ Build-Depends: debhelper (>= 11~), python3-numpy, python3-six, python3-mock -Standards-Version: 4.2.1 +Standards-Version: 4.4.0 Vcs-Browser: https://salsa.debian.org/med-team/python-pyfaidx Vcs-Git: https://salsa.debian.org/med-team/python-pyfaidx.git Homepage: https://github.com/mdshw5/pyfaidx -Package: python-pyfaidx -Architecture: all -Depends: ${misc:Depends}, - ${python:Depends} -Description: efficient random access to fasta subsequences for Python - Samtools provides a function "faidx" (FAsta InDeX), which creates a - small flat index file ".fai" allowing for fast random access to any - subsequence in the indexed FASTA file, while loading a minimal amount of - the file in to memory. This Python module implements pure Python classes - for indexing, retrieval, and in-place modification of FASTA files using - a samtools compatible index. The pyfaidx module is API compatible with - the pygr seqdb module. A command-line script "faidx" is installed - alongside the pyfaidx module, and facilitates complex manipulation of - FASTA files without any programming knowledge. - . - This package provides the Python 2 modules to access fasta files. - Package: python3-pyfaidx Architecture: all Depends: ${misc:Depends}, @@ -62,7 +38,7 @@ Description: efficient random access to fasta subsequences for Python 3 Package: python-pyfaidx-examples Architecture: all Depends: ${misc:Depends} -Suggests: python3-pyfaidx | python-pyfaidx +Suggests: python3-pyfaidx Description: example data for efficient random access to fasta subsequences for Python Samtools provides a function "faidx" (FAsta InDeX), which creates a small flat index file ".fai" allowing for fast random access to any ===================================== debian/rules ===================================== @@ -7,16 +7,13 @@ export PYBUILD_NAME=pyfaidx %: - LC_ALL=C.UTF-8 dh $@ --with python2,python3 --buildsystem=pybuild - -override_dh_install: - dh_install - # remove duplilcated wrapper script from Python2 package - rm -rf debian/python-$(PYBUILD_NAME)/usr/bin + LC_ALL=C.UTF-8 dh $@ --with python3 --buildsystem=pybuild override_dh_auto_test: +ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS))) dh_auto_test -- --test --system=custom --test-args='set -e; \ {interpreter} -m "nose" --with-coverage --cover-package=pyfaidx' +endif override_dh_compress: dh_compress --exclude=gz.tbi View it on GitLab: https://salsa.debian.org/med-team/python-pyfaidx/compare/79c0ed066726719ca6beb32b4e732f0ad4325271...8d6959e675b088c32f67eac0bfb79e4f7d8764f1 -- View it on GitLab: https://salsa.debian.org/med-team/python-pyfaidx/compare/79c0ed066726719ca6beb32b4e732f0ad4325271...8d6959e675b088c32f67eac0bfb79e4f7d8764f1 You're receiving this email because of your account on salsa.debian.org.
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