Andreas Tille pushed to branch master at Debian Med / fastqtl
Commits: 36297498 by Andreas Tille at 2019-09-09T12:07:55Z pass cross tools to make - - - - - d2c7fd26 by Andreas Tille at 2019-09-09T12:08:08Z debhelper-compat 12 - - - - - f5609344 by Andreas Tille at 2019-09-09T12:08:12Z Standards-Version: 4.4.0 - - - - - 63aa10a6 by Andreas Tille at 2019-09-09T12:08:13Z Trim trailing whitespace. Fixes lintian: file-contains-trailing-whitespace See https://lintian.debian.org/tags/file-contains-trailing-whitespace.html for more details. - - - - - 24c1e90a by Andreas Tille at 2019-09-09T12:08:16Z Remove obsolete fields Name, Contact from debian/upstream/metadata. - - - - - d0cfb623 by Andreas Tille at 2019-09-09T12:35:53Z Upload to unstable - - - - - 7 changed files: - debian/changelog - − debian/compat - debian/control - + debian/patches/cross.patch - debian/patches/series - debian/rules - debian/upstream/metadata Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,20 @@ +fastqtl (2.184+dfsg-7) unstable; urgency=medium + + * Team upload + + [ Helmut Grohne ] + * Fix FTCBFS: (Closes: #939811) + + Let dh_auto_build pass cross tools to make. + + cross.patch: Fix Makefile dependencies. + + [ Andreas Tille ] + * debhelper-compat 12 + * Standards-Version: 4.4.0 + * Trim trailing whitespace. + * Remove obsolete fields Name, Contact from debian/upstream/metadata. + + -- Andreas Tille <[email protected]> Mon, 09 Sep 2019 14:08:17 +0200 + fastqtl (2.184+dfsg-6) unstable; urgency=medium * Team upload ===================================== debian/compat deleted ===================================== @@ -1 +0,0 @@ -11 ===================================== debian/control ===================================== @@ -3,7 +3,7 @@ Maintainer: Debian Med Packaging Team <[email protected]. Uploaders: Dylan Aïssi <[email protected]> Section: science Priority: optional -Build-Depends: debhelper (>= 11~), +Build-Depends: debhelper-compat (= 12), libboost-dev, libboost-iostreams-dev, libboost-program-options-dev, @@ -13,7 +13,7 @@ Build-Depends: debhelper (>= 11~), libblas-dev, libeigen3-dev, libhts-dev -Standards-Version: 4.1.5 +Standards-Version: 4.4.0 Vcs-Browser: https://salsa.debian.org/med-team/fastqtl Vcs-Git: https://salsa.debian.org/med-team/fastqtl.git Homepage: http://fastqtl.sourceforge.net/ ===================================== debian/patches/cross.patch ===================================== @@ -0,0 +1,16 @@ +Author: Helmut Grohne <[email protected]> +Last-Update: Mon, 9 Sep 2019 06:18:33 +0200 +Description: pass cross tools to make +Bug-Debian: https://bugs.debian.org/939811 + +--- fastqtl-2.184+dfsg.orig/Makefile ++++ fastqtl-2.184+dfsg/Makefile +@@ -90,7 +90,7 @@ + $(LIB_TABX): + cd $(PATH_TABX) && make && cd ../.. + +-$(FILE_BIN): $(FILE_O) $(LIB_TABX) ++$(FILE_BIN): $(FILE_O) $(if $(DYNAMIC_LINK),,$(LIB_TABX)) + $(CXX) $(LDFLAG) $^ $(LIB) -o $@ + + obj/%.o: %.cpp $(FILE_H) ===================================== debian/patches/series ===================================== @@ -1,3 +1,4 @@ 01_Makefile_dynamic_hardenings.patch 02_Replace_libtabix_by_libhts.patch 03_Reproducible_builds.patch +cross.patch ===================================== debian/rules ===================================== @@ -11,7 +11,6 @@ export DEB_BUILD_MAINT_OPTIONS = hardening=+all override_dh_auto_build: mkdir -p $(CURDIR)/obj/ mkdir -p $(CURDIR)/bin/ - $(MAKE) CXXFLAGS='$(CXXFLAGS)' + dh_auto_build -- CXXFLAGS='$(CXXFLAGS)' cd $(CURDIR)/example/ && \ tar Jcvf examples.tar.xz * --sort=name --mode=go=rX,u+rw,a-s --owner=root --group=root --numeric-owner - ===================================== debian/upstream/metadata ===================================== @@ -1,17 +1,16 @@ -Contact: Olivier Delaneau <olivier.delaneau at gmail.com> -Name: FastQTL Reference: - - Author: Halit Ongen and Alfonso Buil and Andrew Anand Brown and Emmanouil T. Dermitzakis and and Olivier Delaneau - Title: "Fast and efficient QTL mapper for thousands of molecular phenotypes" - Journal: Bioinformatics - Year: 2015 - DOI: 10.1093/bioinformatics/btv722 - URL: https://bioinformatics.oxfordjournals.org/content/32/10/1479.full - eprint: https://bioinformatics.oxfordjournals.org/content/32/10/1479.full.pdf+html +- Author: Halit Ongen and Alfonso Buil and Andrew Anand Brown and Emmanouil T. Dermitzakis + and and Olivier Delaneau + Title: "Fast and efficient QTL mapper for thousands of molecular phenotypes" + Journal: Bioinformatics + Year: 2015 + DOI: 10.1093/bioinformatics/btv722 + URL: https://bioinformatics.oxfordjournals.org/content/32/10/1479.full + eprint: https://bioinformatics.oxfordjournals.org/content/32/10/1479.full.pdf+html Registry: - - Name: SciCrunch - Entry: NA - - Name: OMICtools - Entry: OMICS_10934 - - Name: bio.tools - Entry: NA +- Name: SciCrunch + Entry: NA +- Name: OMICtools + Entry: OMICS_10934 +- Name: bio.tools + Entry: NA View it on GitLab: https://salsa.debian.org/med-team/fastqtl/compare/360336124ab3ea8dccef84edbdacfbbc994c5543...d0cfb6231b828ba2d74001d2c239d131382c5ba7 -- View it on GitLab: https://salsa.debian.org/med-team/fastqtl/compare/360336124ab3ea8dccef84edbdacfbbc994c5543...d0cfb6231b828ba2d74001d2c239d131382c5ba7 You're receiving this email because of your account on salsa.debian.org.
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