Andreas Tille pushed to branch master at Debian Med / ngs-sdk
Commits: 451a0670 by Andreas Tille at 2019-09-11T09:08:26Z Drop Python2 support - - - - - 6bbd5c76 by Andreas Tille at 2019-09-11T09:10:08Z debhelper-compat 12 - - - - - 5cbd0aa9 by Andreas Tille at 2019-09-11T09:10:23Z Standards-Version: 4.4.0 - - - - - e99ef78b by Andreas Tille at 2019-09-11T09:10:23Z Remove trailing whitespace in debian/changelog - - - - - 7aacb2e7 by Andreas Tille at 2019-09-11T09:27:05Z Upload to unstable - - - - - 4 changed files: - debian/changelog - − debian/compat - debian/control - debian/rules Changes: ===================================== debian/changelog ===================================== @@ -1,7 +1,17 @@ +ngs-sdk (2.10.0-2) unstable; urgency=medium + + * Drop Python2 support + Closes: #937139 + * debhelper-compat 12 + * Standards-Version: 4.4.0 + * Remove trailing whitespace in debian/changelog + + -- Andreas Tille <[email protected]> Wed, 11 Sep 2019 11:10:25 +0200 + ngs-sdk (2.10.0-1) unstable; urgency=medium [ Olivier Sallou ] - * New upstream release + * New upstream release -- Olivier Sallou <[email protected]> Wed, 11 Sep 2019 07:27:49 +0000 ===================================== debian/compat deleted ===================================== @@ -1 +0,0 @@ -11 ===================================== debian/control ===================================== @@ -5,17 +5,16 @@ Uploaders: Andreas Tille <[email protected]>, Vincent Danjean <[email protected]> Section: science Priority: optional -Build-Depends: debhelper (>= 11~), +Build-Depends: debhelper-compat (= 12), d-shlibs, - python-markdown, - python-all-dev, + markdown, python3-all, python3-distutils, dh-python, javahelper, maven-repo-helper, default-jdk -Standards-Version: 4.2.1 +Standards-Version: 4.4.0 Vcs-Browser: https://salsa.debian.org/med-team/ngs-sdk Vcs-Git: https://salsa.debian.org/med-team/ngs-sdk.git Homepage: https://github.com/ncbi/ngs @@ -81,27 +80,6 @@ Description: Next Generation Sequencing language Bindings (Java bindings) . Java bindings. -Package: python-ngs -Architecture: any -Section: python -Depends: ${python:Depends}, - ${misc:Depends}, - libngs-sdk-dev (= ${binary:Version}) -Description: Next Generation Sequencing language Bindings (Python bindings) - NGS is a new, domain-specific API for accessing reads, alignments and - pileups produced from Next Generation Sequencing. The API itself is - independent from any particular back-end implementation, and supports - use of multiple back-ends simultaneously. It also provides a library for - building new back-end "engines". The engine for accessing SRA data is - contained within the sister repository ncbi-vdb. - . - The API is currently expressed in C++, Java and Python languages. The - design makes it possible to maintain a high degree of similarity between - the code in one language and code in another - especially between C++ - and Java. - . - Python bindings. - Package: python3-ngs Architecture: any Section: python ===================================== debian/rules ===================================== @@ -12,11 +12,10 @@ MULTIARCH := $(shell dpkg-architecture -qDEB_HOST_MULTIARCH) # since build-results are not ending up in the proper dir its saver to use "*" instead of "$(CPU)" SODIR := $(DEB_SOURCE)/$(MULTIARCH)/$(DEB_SOURCE)/$(OS)/gcc/* -build2vers := $(shell pyversions -sv) build3vers := $(shell py3versions -sv) %: - dh $@ --with python2,python3,javahelper,jh_maven_repo_helper + dh $@ --with python3,javahelper,jh_maven_repo_helper override_dh_auto_clean: if [ -e ngs-sdk/Makefile.config.$(OS).$(CPU) ] ; then \ @@ -46,7 +45,7 @@ override_dh_auto_build: #cd ngs-bam && LD_LIBRARY_PATH=../$(SODIR)/rel/lib ./configure --build=$(MULTIARCH) --prefix=/usr --with-ngs-sdk-prefix=../ngs-sdk #dh_auto_build --sourcedirectory=ngs-bam dh_auto_build --sourcedirectory=ngs-java -- JAVAC="javac -source 1.7 -target 1.7" - markdown_py -f README.html README.md + markdown README.md > README.html override_dh_auto_test: ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS))) @@ -75,12 +74,6 @@ override_dh_install: python$$i ./setup.py install --install-layout=deb --root ../debian/python3-ngs; \ cd .. ; \ done - dh_install -ppython-ngs - set -e && for i in $(build2vers); do \ - cd ngs-python ; \ - python$$i ./setup.py install --install-layout=deb --root ../debian/python-ngs; \ - cd .. ; \ - done find debian -name "*.pyc" -delete find debian -type d -name __pycache__ | xargs rm -rf View it on GitLab: https://salsa.debian.org/med-team/ngs-sdk/compare/2873cc0fc8ca137483901441174808c8697d5962...7aacb2e730139b19dcfcd794ed8d058a3e771c32 -- View it on GitLab: https://salsa.debian.org/med-team/ngs-sdk/compare/2873cc0fc8ca137483901441174808c8697d5962...7aacb2e730139b19dcfcd794ed8d058a3e771c32 You're receiving this email because of your account on salsa.debian.org.
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