Andreas Tille pushed to branch master at Debian Med / lefse
Commits:
c5b0fcc9 by Andreas Tille at 2019-09-11T15:45:13Z
DEP3
- - - - -
228c5c0e by Andreas Tille at 2019-09-11T15:46:22Z
Spelling
- - - - -
4 changed files:
- debian/mans/plot_features.1
- debian/mans/plot_res.1
- debian/mans/run_lefse.1
- debian/patches/2to3.patch
Changes:
=====================================
debian/mans/plot_features.1
=====================================
@@ -63,7 +63,7 @@ unused
the format for the output file
.TP
\fB\-f\fR {all,diff,one}
-wheter to plot all features (all), only those
+whether to plot all features (all), only those
differentially abundant according to LEfSe or only one
(the one given with \fB\-\-feature_name\fR)
.TP
=====================================
debian/mans/plot_res.1
=====================================
@@ -60,7 +60,7 @@ only for vertical histograms
set the color of the background
.TP
\fB\-\-subclades\fR N_SCL
-number of label levels to be dislayed (starting from
+number of label levels to be displayed (starting from
the leaves, \fB\-1\fR means all the levels, 1 is default )
.TP
\fB\-\-max_feature_len\fR MAX_FEATURE_LEN
=====================================
debian/mans/run_lefse.1
=====================================
@@ -46,7 +46,7 @@ max log ingluence of LDA coeff
verbose execution (default 0)
.TP
\fB\-\-wilc\fR int
-wheter to perform the Wicoxon step (default 1)
+whether to perform the Wicoxon step (default 1)
.TP
\fB\-r\fR str
select LDA or SVM for effect size (default LDA)
=====================================
debian/patches/2to3.patch
=====================================
@@ -1,3 +1,8 @@
+Description: 2to3 to port from python2 to python3
+Bug-Debian: https://bugs.debian.org/936836
+Author: Shayan Doust <[email protected]>
+Last-Update: Mon, 09 Sep 2019 21:01:50 +0200
+
Index: lefse/format_input.py
===================================================================
--- lefse.orig/format_input.py 2019-09-10 20:26:24.056276041 +0100
View it on GitLab:
https://salsa.debian.org/med-team/lefse/compare/dcb120771353d143262bb0d080b9b7d501a6e31d...228c5c0e15966c9e51f636c27be70164811acfbc
--
View it on GitLab:
https://salsa.debian.org/med-team/lefse/compare/dcb120771353d143262bb0d080b9b7d501a6e31d...228c5c0e15966c9e51f636c27be70164811acfbc
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