Andreas Tille pushed to branch master at Debian Med / bamtools
Commits: c5541a8f by Andreas Tille at 2019-12-10T11:00:03Z Ignore one test that is known to fail on ppc64el architecture - - - - - 47ea9541 by Andreas Tille at 2019-12-10T11:00:35Z Set upstream metadata fields: Bug-Database, Repository, Repository-Browse. - - - - - 303e4ac0 by Andreas Tille at 2019-12-10T11:06:29Z routine-update: Ready to upload to unstable - - - - - 3 changed files: - debian/changelog - debian/tests/run-unit-test - debian/upstream/metadata Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,12 @@ +bamtools (2.5.1+dfsg-5) unstable; urgency=medium + + * Ignore one test that is known to fail on ppc64el architecture + Closes: #933505 + * Set upstream metadata fields: Bug-Database, Repository, Repository- + Browse. + + -- Andreas Tille <[email protected]> Tue, 10 Dec 2019 12:00:36 +0100 + bamtools (2.5.1+dfsg-4) unstable; urgency=medium [ Jelmer Vernooij ] ===================================== debian/tests/run-unit-test ===================================== @@ -21,7 +21,13 @@ bamtools count -in sam_spec_example.bam bamtools coverage -in sam_spec_example.bam -out out -bamtools filter -script filter_script -in sam_spec_example.bam -out out.bam +# This test fails on ppc64el for whatever reason and is for the moment (see bug #933505) +if [ "$(dpkg --print-architecture)" != "ppc64el" ] ; then + bamtools filter -script filter_script -in sam_spec_example.bam -out out.bam +else + echo "The following test is known to fail on ppc64el architecture (see bug #933505)" + echo "bamtools filter -script filter_script -in sam_spec_example.bam -out out.bam" +fi bamtools header -in sam_spec_example.bam ===================================== debian/upstream/metadata ===================================== @@ -1,26 +1,28 @@ Reference: - - Author: > +- Author: > Derek W. Barnett and Erik K. Garrison and Aaron R. Quinlan and Michael P. Stromberg and Gabor T. Marth - Title: > + Title: > BamTools: a C++ API and toolkit for analyzing and managing BAM files - Journal: Bioinformatics - Year: 2011 - Volume: 27 - Number: 12 - Pages: 1691-2 - DOI: 10.1093/bioinformatics/btr174 - PMID: 21493652 - URL: http://bioinformatics.oxfordjournals.org/content/27/12/1691 - eprint: > + Journal: Bioinformatics + Year: 2011 + Volume: 27 + Number: 12 + Pages: 1691-2 + DOI: 10.1093/bioinformatics/btr174 + PMID: 21493652 + URL: http://bioinformatics.oxfordjournals.org/content/27/12/1691 + eprint: > http://bioinformatics.oxfordjournals.org/content/27/12/1691.full.pdf+html Registry: - - Name: OMICtools - Entry: OMICS_11315 - - Name: SciCrunch - Entry: SCR_015987 - - Name: bio.tools - Entry: BamTools - - Name: conda:bioconda - Entry: bamtools -Repository: https://github.com/pezmaster31/bamtools +- Name: OMICtools + Entry: OMICS_11315 +- Name: SciCrunch + Entry: SCR_015987 +- Name: bio.tools + Entry: BamTools +- Name: conda:bioconda + Entry: bamtools +Repository: https://github.com/pezmaster31/bamtools.git +Bug-Database: https://github.com/pezmaster31/bamtools/issues +Repository-Browse: https://github.com/pezmaster31/bamtools View it on GitLab: https://salsa.debian.org/med-team/bamtools/compare/4075887534f4f531c84dc331ba4b2c724f8bd7c2...303e4ac0e1d12f4cade7623aba5feb39d8495a7f -- View it on GitLab: https://salsa.debian.org/med-team/bamtools/compare/4075887534f4f531c84dc331ba4b2c724f8bd7c2...303e4ac0e1d12f4cade7623aba5feb39d8495a7f You're receiving this email because of your account on salsa.debian.org.
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