Andreas Tille pushed to branch master at Debian Med / metastudent
Commits: 8f20a66f by Andreas Tille at 2019-12-11T09:40:28Z Depends: ncbi-blast+-legacy - - - - - edb1e293 by Andreas Tille at 2019-12-11T09:43:36Z routine-update: Standards-Version: 4.4.1 - - - - - 96d00913 by Andreas Tille at 2019-12-11T09:52:56Z routine-update: Ready to upload to unstable - - - - - 08660def by Andreas Tille at 2019-12-11T10:38:12Z Rename autopkgtest script - - - - - 76eeb849 by Andreas Tille at 2019-12-11T10:38:43Z R-U: autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g - - - - - 5b9aa08d by Andreas Tille at 2019-12-11T10:46:52Z routine-update: Ready to upload to unstable - - - - - 70416946 by Andreas Tille at 2019-12-11T11:01:34Z Merge unintended changelog entries - - - - - 6 changed files: - debian/README.test - debian/changelog - debian/control - debian/docs - debian/tests/control - debian/tests/installation-test → debian/tests/run-unit-test Changes: ===================================== debian/README.test ===================================== @@ -3,7 +3,7 @@ Notes on how this package can be tested. This package can be tested by executing - sh installation-test + sh run-unit-test in order to confirm its integrity. ===================================== debian/changelog ===================================== @@ -1,3 +1,13 @@ +metastudent (2.0.1-8) unstable; urgency=medium + + * Team upload. + * Depends: ncbi-blast+-legacy + Closes: #946538 + * Standards-Version: 4.4.1 + * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g + + -- Andreas Tille <[email protected]> Wed, 11 Dec 2019 10:43:44 +0100 + metastudent (2.0.1-7) unstable; urgency=medium [ Jelmer Vernooij ] ===================================== debian/control ===================================== @@ -4,12 +4,12 @@ Uploaders: Tobias Hamp <[email protected]>, Laszlo Kajan <[email protected]> Section: science Priority: optional -Build-Depends: debhelper-compat (= 12), +Build-Depends: debhelper-compat (= 12) Build-Depends-Indep: dh-python, python3-all, javahelper, default-jdk -Standards-Version: 4.4.0 +Standards-Version: 4.4.1 Vcs-Browser: https://salsa.debian.org/med-team/metastudent Vcs-Git: https://salsa.debian.org/med-team/metastudent.git Homepage: https://rostlab.org/owiki/index.php/Metastudent @@ -20,7 +20,7 @@ Depends: ${misc:Depends}, ${perl:Depends}, ${python3:Depends}, python3, - blast2, + ncbi-blast+-legacy, default-jre, libgo-perl (>= 0.15-3), libipc-run-perl, ===================================== debian/docs ===================================== @@ -1,2 +1,2 @@ debian/README.test -debian/tests/installation-test +debian/tests/run-unit-test ===================================== debian/tests/control ===================================== @@ -1,3 +1,3 @@ -Tests: installation-test +Tests: run-unit-test Depends: @, @builddeps@, metastudent-data, libgo-perl Restrictions: allow-stderr ===================================== debian/tests/installation-test → debian/tests/run-unit-test ===================================== @@ -6,12 +6,12 @@ set -e pkg=metastudent -if [ "$ADTTMP" = "" ] ; then - ADTTMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX) - trap "rm -rf $ADTTMP" 0 INT QUIT ABRT PIPE TERM +if [ "$AUTOPKGTEST_TMP" = "" ] ; then + AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX) + trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM fi -cd $ADTTMP +cd $AUTOPKGTEST_TMP cp -a /usr/share/doc/${pkg}/examples/* . find . -type f -name "*.gz" -exec gunzip \{\} \; @@ -21,7 +21,7 @@ for lnk in `find . -type l -name "*.gz"` ; do done # call example from man: -metastudent -i test.fasta -o test.result.new --temp-dir=$ADTTMP +metastudent -i test.fasta -o test.result.new --temp-dir=$AUTOPKGTEST_TMP [ -z $(cmp -s test.result.BPO.txt test.result.new.BPO.txt) ] [ -z $(cmp -s test.result.MFO.txt test.result.new.MFO.txt) ] [ -z $(cmp -s test.result.CCO.txt test.result.new.CCO.txt) ] View it on GitLab: https://salsa.debian.org/med-team/metastudent/compare/da71c52611fe7158feb9b1d6fcb5eec059f092a8...704169465a181b5935d17e6bc764f330c25848f4 -- View it on GitLab: https://salsa.debian.org/med-team/metastudent/compare/da71c52611fe7158feb9b1d6fcb5eec059f092a8...704169465a181b5935d17e6bc764f330c25848f4 You're receiving this email because of your account on salsa.debian.org.
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