Andreas Tille pushed to branch master at Debian Med / seqsero
Commits: fd86a125 by Andreas Tille at 2019-12-11T15:45:15Z Use 2to3 to port from Python2 to Python3 - - - - - 2b1239ef by Andreas Tille at 2019-12-11T15:45:48Z routine-update: debhelper-compat 12 - - - - - 3153e206 by Andreas Tille at 2019-12-11T15:45:57Z routine-update: Standards-Version: 4.4.1 - - - - - 03dac548 by Andreas Tille at 2019-12-11T15:46:04Z Set upstream metadata fields: Bug-Database. - - - - - 58a90791 by Andreas Tille at 2019-12-11T15:48:58Z Packaging with Python3 - - - - - 53b255c0 by Andreas Tille at 2019-12-11T15:50:42Z Upload to unstable - - - - - 7 changed files: - debian/changelog - − debian/compat - debian/control - + debian/patches/2to3.patch - debian/patches/series - debian/rules - debian/upstream/metadata Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,13 @@ +seqsero (1.0.1+dfsg-2) unstable; urgency=medium + + * Use 2to3 to port from Python2 to Python3 + Closes: #938468 + * debhelper-compat 12 + * Standards-Version: 4.4.1 + * Set upstream metadata fields: Bug-Database. + + -- Andreas Tille <[email protected]> Wed, 11 Dec 2019 16:49:23 +0100 + seqsero (1.0.1+dfsg-1) unstable; urgency=medium * New upstream version ===================================== debian/compat deleted ===================================== @@ -1 +0,0 @@ -11 ===================================== debian/control ===================================== @@ -3,21 +3,21 @@ Maintainer: Debian Med Packaging Team <[email protected]. Uploaders: Andreas Tille <[email protected]> Section: science Priority: optional -Build-Depends: debhelper (>= 11~), +Build-Depends: debhelper-compat (= 12), dh-python, - python, + python3, bwa, sra-toolkit -Standards-Version: 4.2.1 +Standards-Version: 4.4.1 Vcs-Browser: https://salsa.debian.org/med-team/seqsero Vcs-Git: https://salsa.debian.org/med-team/seqsero.git Homepage: https://github.com/denglab/SeqSero Package: seqsero Architecture: all -Depends: ${python:Depends}, +Depends: ${python3:Depends}, ${misc:Depends}, - python-biopython, + python3-biopython, bwa, samtools, sra-toolkit ===================================== debian/patches/2to3.patch ===================================== The diff for this file was not included because it is too large. ===================================== debian/patches/series ===================================== @@ -1,2 +1,3 @@ fix_perl_interpreter.patch fix_usage.patch +2to3.patch ===================================== debian/rules ===================================== @@ -3,7 +3,7 @@ # DH_VERBOSE := 1 %: - dh $@ --with python2 + dh $@ --with python3 override_dh_fixperms: dh_fixperms ===================================== debian/upstream/metadata ===================================== @@ -1,28 +1,29 @@ Reference: - Author: > - Shaokang Zhang and Yanlong Yin and Marcus B. Jones and Zhenzhen Zhang and - Brooke L. Deatherage Kaiser and Blake A. Dinsmore and Collette Fitzgerald - and Patricia I. Fields and Xiangyu Deng - Title: > - Salmonella Serotype Determination Utilizing High-throughput - Genome Sequencing Data - Journal: Journal of Clinical Microbiology - Year: 2015 - Volume: 53 - Number: 5 - Pages: 1685-92 - DOI: 10.1128/JCM.00323-15 - PMID: 25762776 - URL: "http://jcm.asm.org/content/early/2015/03/05/JCM.00323-15"; - eprint: > - http://jcm.asm.org/content/early/2015/03/05/JCM.00323-15.full.pdf+html + Author: > + Shaokang Zhang and Yanlong Yin and Marcus B. Jones and Zhenzhen Zhang and + Brooke L. Deatherage Kaiser and Blake A. Dinsmore and Collette Fitzgerald + and Patricia I. Fields and Xiangyu Deng + Title: > + Salmonella Serotype Determination Utilizing High-throughput + Genome Sequencing Data + Journal: Journal of Clinical Microbiology + Year: 2015 + Volume: 53 + Number: 5 + Pages: 1685-92 + DOI: 10.1128/JCM.00323-15 + PMID: 25762776 + URL: "http://jcm.asm.org/content/early/2015/03/05/JCM.00323-15"; + eprint: > + http://jcm.asm.org/content/early/2015/03/05/JCM.00323-15.full.pdf+html Registry: - - Name: OMICtools - Entry: OMICS_21700 - - Name: bio.tools - Entry: NA - - Name: SciCrunch - Entry: NA - - Name: conda:bioconda - Entry: NA - Comment: Don't confuse with seqsero2 +- Name: OMICtools + Entry: OMICS_21700 +- Name: bio.tools + Entry: NA +- Name: SciCrunch + Entry: NA +- Name: conda:bioconda + Entry: NA + Comment: Don't confuse with seqsero2 +Bug-Database: https://github.com/denglab/SeqSero/issues View it on GitLab: https://salsa.debian.org/med-team/seqsero/compare/0873d6907dd9d81409e234c855c3ed7d46d046c9...53b255c016769314b11f648cdbcd9c64fa5f2229 -- View it on GitLab: https://salsa.debian.org/med-team/seqsero/compare/0873d6907dd9d81409e234c855c3ed7d46d046c9...53b255c016769314b11f648cdbcd9c64fa5f2229 You're receiving this email because of your account on salsa.debian.org.
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