Andreas Tille pushed to branch master at Debian Med / seqan
Commits: 900e7867 by Andreas Tille at 2019-12-16T16:21:07Z Use 2to3 to port from Python2 to Python3 - - - - - 23f45bda by Andreas Tille at 2019-12-16T16:21:33Z routine-update: debhelper-compat 12 - - - - - ac4a96b7 by Andreas Tille at 2019-12-16T16:21:37Z routine-update: Standards-Version: 4.4.1 - - - - - b39e4dec by Andreas Tille at 2019-12-16T16:24:50Z R-U: DEB_BUILD_OPTIONS allow override_dh_auto_test - - - - - 62a97543 by Andreas Tille at 2019-12-16T16:24:50Z R-U: Trailing whitespace in debian/changelog - - - - - cf79b91b by Andreas Tille at 2019-12-16T16:24:50Z R-U: Trailing whitespace in debian/copyright - - - - - d572f041 by Andreas Tille at 2019-12-16T16:24:58Z Set upstream metadata fields: Bug-Database. - - - - - 480682f7 by Andreas Tille at 2019-12-16T16:24:59Z Remove obsolete fields Contact, Name from debian/upstream/metadata. - - - - - 83441bb8 by Andreas Tille at 2019-12-16T16:25:00Z Rely on pre-initialized dpkg-architecture variables. Fixes lintian: debian-rules-sets-dpkg-architecture-variable See https://lintian.debian.org/tags/debian-rules-sets-dpkg-architecture-variable.html for more details. - - - - - 8 changed files: - debian/changelog - − debian/compat - debian/control - debian/copyright - + debian/patches/2to3.patch - debian/patches/series - debian/rules - debian/upstream/metadata Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,18 @@ +seqan (1.4.2+dfsg-4) UNRELEASED; urgency=medium + + * Use 2to3 to port from Python2 to Python3 + Closes: #943260 + * debhelper-compat 12 + * Standards-Version: 4.4.1 + * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target + * Remove trailing whitespace in debian/changelog + * Remove trailing whitespace in debian/copyright + * Set upstream metadata fields: Bug-Database. + * Remove obsolete fields Contact, Name from debian/upstream/metadata. + * Rely on pre-initialized dpkg-architecture variables. + + -- Andreas Tille <[email protected]> Mon, 16 Dec 2019 17:19:24 +0100 + seqan (1.4.2+dfsg-3) unstable; urgency=medium * debhelper 11 @@ -17,7 +32,7 @@ seqan (1.4.2+dfsg-2) unstable; urgency=medium seqan (1.4.2+dfsg-1) unstable; urgency=medium - [Andreas Tille] + [Andreas Tille] * New upstream version Closes: #766741 * Moved packaging to Git @@ -33,9 +48,9 @@ seqan (1.4.2+dfsg-1) unstable; urgency=medium Closes: #816988, #809058 * Install cmake files Closes: #818088 - + [Gert Wollny] - * d/rules: Add -DNDEBUG to CXXFLAGS, Closes: #811841 + * d/rules: Add -DNDEBUG to CXXFLAGS, Closes: #811841 * d/rules: enable parallel build -- Andreas Tille <[email protected]> Tue, 02 Aug 2016 15:58:06 +0200 ===================================== debian/compat deleted ===================================== @@ -1 +0,0 @@ -11 ===================================== debian/control ===================================== @@ -5,7 +5,7 @@ Uploaders: Andreas Tille <[email protected]>, Kevin Murray <[email protected]> Section: science Priority: optional -Build-Depends: debhelper (>= 11~), +Build-Depends: debhelper-compat (= 12), cmake, zlib1g-dev, libbam-dev, @@ -13,7 +13,7 @@ Build-Depends: debhelper (>= 11~), dh-exec, help2man, python -Standards-Version: 4.1.5 +Standards-Version: 4.4.1 Vcs-Browser: https://salsa.debian.org/med-team/seqan Vcs-Git: https://salsa.debian.org/med-team/seqan.git Homepage: http://www.seqan.de/ ===================================== debian/copyright ===================================== @@ -144,7 +144,7 @@ License: LGPL-3+ modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version. - . + . This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU ===================================== debian/patches/2to3.patch ===================================== The diff for this file was not included because it is too large. ===================================== debian/patches/series ===================================== @@ -1,2 +1,3 @@ skip_extras_and_apps.patch skip_doc_creation.patch +2to3.patch ===================================== debian/rules ===================================== @@ -8,9 +8,8 @@ export DH_VERBOSE=1 export DEB_BUILD_MAINT_OPTIONS = hardening=-stackprotector # alternatively: export DEB_CXXFLAGS_STRIP='-fstack-protector' -DEB_HOST_ARCH ?= $(shell dpkg-architecture -qDEB_HOST_ARCH) +include /usr/share/dpkg/architecture.mk -DEB_BUILD_ARCH ?= $(shell dpkg-architecture -qDEB_BUILD_ARCH) ifneq (,$(filter $(DEB_BUILD_ARCH),mips mipsel)) export CXXFLAGS:=$(shell dpkg-buildflags --get CXXFLAGS | sed 's/-O[1-9]//') -O0 -mxgot endif @@ -41,12 +40,14 @@ override_dh_auto_clean: rm -rf orig override_dh_auto_test: +ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS))) # Run test suite only on powerfull architectures (amd64) at build time ifneq (,$(filter $(DEB_HOST_ARCH),amd64 kfreebsd-amd64)) dh_auto_test else echo "Do not run test suite when building on architecture $(DEB_HOST_ARCH)" endif +endif override_dh_fixperms: dh_fixperms ===================================== debian/upstream/metadata ===================================== @@ -1,25 +1,24 @@ -Contact: SeqAn Team (http://www.seqan.de/contact-us.html) Donation: http://www.seqan.de/ -Name: SeqAn Reference: - Author: Doring, Andreas and Weese, David and Rausch, Tobias and Reinert, Knut - Title: SeqAn An efficient, generic C++ library for sequence analysis - Journal: BMC Bioinformatics - Volume: 9 - Year: 2008 - Number: 1 - Pages: 11 - DOI: 10.1186/1471-2105-9-11 - PMID: 18184432 - URL: http://www.biomedcentral.com/1471-2105/9/11 - ePrint: http://www.biomedcentral.com/content/pdf/1471-2105-9-11.pdf - ISSN: 1471-2105 + Author: Doring, Andreas and Weese, David and Rausch, Tobias and Reinert, Knut + Title: SeqAn An efficient, generic C++ library for sequence analysis + Journal: BMC Bioinformatics + Volume: 9 + Year: 2008 + Number: 1 + Pages: 11 + DOI: 10.1186/1471-2105-9-11 + PMID: 18184432 + URL: http://www.biomedcentral.com/1471-2105/9/11 + ePrint: http://www.biomedcentral.com/content/pdf/1471-2105-9-11.pdf + ISSN: 1471-2105 Registry: - - Name: OMICtools - Entry: OMICS_14825 - - Name: SciCrunch - Entry: NA - - Name: conda:bioconda - Entry: NA - - Name: bio.tools - Entry: seqan +- Name: OMICtools + Entry: OMICS_14825 +- Name: SciCrunch + Entry: NA +- Name: conda:bioconda + Entry: NA +- Name: bio.tools + Entry: seqan +Bug-Database: https://github.com/seqan/seqan/issues View it on GitLab: https://salsa.debian.org/med-team/seqan/compare/0d04b442805fa44d45ea8db20e5c6e94a143d746...83441bb8f212738e97f3faef2176fced68074cc8 -- View it on GitLab: https://salsa.debian.org/med-team/seqan/compare/0d04b442805fa44d45ea8db20e5c6e94a143d746...83441bb8f212738e97f3faef2176fced68074cc8 You're receiving this email because of your account on salsa.debian.org.
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