Andreas Tille pushed to branch master at Debian Med / sibelia
Commits: 42b79ebd by Andreas Tille at 2020-01-04T21:00:37+01:00 routine-update: debhelper-compat 12 - - - - - 4dc66a48 by Andreas Tille at 2020-01-04T21:01:07+01:00 routine-update: Standards-Version: 4.4.1 - - - - - 83edc701 by Andreas Tille at 2020-01-04T21:01:35+01:00 Set upstream metadata fields: Bug-Database. - - - - - f16847f3 by Andreas Tille at 2020-01-04T21:02:52+01:00 Really upload to new - - - - - 4 changed files: - debian/changelog - − debian/compat - debian/control - debian/upstream/metadata Changes: ===================================== debian/changelog ===================================== @@ -2,4 +2,4 @@ sibelia (3.0.7+dfsg-1) unstable; urgency=medium * Initial release (Closes: #922377) - -- Andreas Tille <[email protected]> Fri, 15 Feb 2019 11:15:26 +0100 + -- Andreas Tille <[email protected]> Sat, 04 Jan 2020 21:01:36 +0100 ===================================== debian/compat deleted ===================================== @@ -1 +0,0 @@ -12 ===================================== debian/control ===================================== @@ -2,11 +2,12 @@ Source: sibelia Maintainer: Debian Med Packaging Team <[email protected]> Uploaders: Andreas Tille <[email protected]> Section: non-free/science +XS-Autobuild: no Priority: optional -Build-Depends: debhelper (>= 12~), +Build-Depends: debhelper-compat (= 12), cmake, libdivsufsort-dev -Standards-Version: 4.3.0 +Standards-Version: 4.4.1 Vcs-Browser: https://salsa.debian.org/med-team/sibelia Vcs-Git: https://salsa.debian.org/med-team/sibelia.git Homepage: http://bioinf.spbau.ru/sibelia @@ -34,7 +35,7 @@ Description: comparative genomics tool Package: sibelia-examples Architecture: all -Depends: ${misc:Depends}, +Depends: ${misc:Depends} Description: comparative genomics tool (example data) Sibelia (Synteny Block ExpLoration tool) is a comparative genomics tool: It assists biologists in analysing the genomic variations that correlate @@ -50,24 +51,3 @@ Description: comparative genomics tool (example data) 3) rearrangements that transform one genome to other genomes. . This package contains example data for sibelia. - -#Package: sibelia-annotate -#Architecture: all -#Depends: ${misc:Depends}, -# python, -# openjdk-11-jre | default-jre -#Description: comparative genomics tool (annotation tool using snpEFF) -# Sibelia (Synteny Block ExpLoration tool) is a comparative genomics tool: -# It assists biologists in analysing the genomic variations that correlate -# with pathogens, or the genomic changes that help microorganisms adapt in -# different environments. Sibelia will also be helpful for the -# evolutionary and genome rearrangement studies for multiple strains of -# microorganisms. -# . -# Sibelia is useful in finding: -# . -# 1) shared regions, -# 2) regions that present in one group of genomes but not in others, -# 3) rearrangements that transform one genome to other genomes. -# . -# This package contains an annotation tool using snpEFF. ===================================== debian/upstream/metadata ===================================== @@ -1,20 +1,21 @@ Reference: - - Author: > +- Author: > Ilya Minkin and Anand Patel and Mikhail Kolmogorov and Nikolay Vyahhi and Son Pham - Title: > + Title: > Sibelia: A Scalable and Comprehensive Synteny Block Generation Tool for Closely Related Microbial Genomes - Journal: Lecture Notes in Computer Science - Year: 2013 - DOI: 10.1007/978-3-642-40453-5_17 - URL: https://link.springer.com/chapter/10.1007/978-3-642-40453-5_17 + Journal: Lecture Notes in Computer Science + Year: 2013 + DOI: 10.1007/978-3-642-40453-5_17 + URL: https://link.springer.com/chapter/10.1007/978-3-642-40453-5_17 Registry: - - Name: bio.tools - Entry: sibelia - - Name: OMICtools - Entry: OMICS_11719 - - Nane: conda:bioconda - Entry: sibelia - - Name: SciCrunch - Entry: NA +- Name: bio.tools + Entry: sibelia +- Name: OMICtools + Entry: OMICS_11719 +- Nane: conda:bioconda + Entry: sibelia +- Name: SciCrunch + Entry: NA +Bug-Database: https://github.com/bioinf/Sibelia/issues View it on GitLab: https://salsa.debian.org/med-team/sibelia/compare/34087e25af090e70107f741112624dc0358198eb...f16847f3fc18f50338218a04241bcdc2f06def1e -- View it on GitLab: https://salsa.debian.org/med-team/sibelia/compare/34087e25af090e70107f741112624dc0358198eb...f16847f3fc18f50338218a04241bcdc2f06def1e You're receiving this email because of your account on salsa.debian.org.
_______________________________________________ debian-med-commit mailing list [email protected] https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
