Andreas Tille pushed to branch master at Debian Med / python-pysam
Commits: 6b346cfe by Andreas Tille at 2020-01-06T17:44:00+01:00 make the build reproducible - - - - - f63e5029 by Andreas Tille at 2020-01-06T17:44:20+01:00 routine-update: Standards-Version: 4.4.1 - - - - - 7483b5c2 by Andreas Tille at 2020-01-06T17:44:22+01:00 debian/copyright: use spaces rather than tabs to start continuation lines. Fixes lintian: tab-in-licence-text See https://lintian.debian.org/tags/tab-in-licence-text.html for more details. - - - - - a6a8463f by Andreas Tille at 2020-01-06T17:44:22+01:00 Set upstream metadata fields: Bug-Database, Repository, Repository-Browse. - - - - - 9f8aea85 by Andreas Tille at 2020-01-06T17:55:52+01:00 routine-update: Ready to upload to unstable - - - - - 5 changed files: - debian/changelog - debian/control - debian/copyright - debian/rules - debian/upstream/metadata Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,18 @@ +python-pysam (0.15.3+ds-5) unstable; urgency=medium + + [ Chris Lamb ] + * make the build reproducible + Closes: #948280 + + [ Andreas Tille ] + * Standards-Version: 4.4.1 + * debian/copyright: use spaces rather than tabs to start continuation + lines. + * Set upstream metadata fields: Bug-Database, Repository, Repository- + Browse. + + -- Andreas Tille <[email protected]> Mon, 06 Jan 2020 17:44:23 +0100 + python-pysam (0.15.3+ds-4) unstable; urgency=medium * Team upload. ===================================== debian/control ===================================== @@ -21,7 +21,7 @@ Build-Depends: debhelper-compat (= 12), bcftools (>= 1.9) <!nocheck>, python-pytest <!nocheck>, python3-pytest <!nocheck> -Standards-Version: 4.4.0 +Standards-Version: 4.4.1 Vcs-Browser: https://salsa.debian.org/med-team/python-pysam Vcs-Git: https://salsa.debian.org/med-team/python-pysam.git Homepage: https://pysam.readthedocs.org/en/latest ===================================== debian/copyright ===================================== @@ -6,26 +6,26 @@ Files-Excluded: htslib/* Files: * Copyright: 2009-2018 Andreas Heger, - Tildon Grant Belgrad, - Martin Goodson, - Kevin Jacobs <[email protected]> - 2008-2010 Genome Research Ltd. + Tildon Grant Belgrad, + Martin Goodson, + Kevin Jacobs <[email protected]> + 2008-2010 Genome Research Ltd. License: MIT Files: bcftools/* Copyright: - 2013-2018 Genome Research Ltd. - 2010-2011 Broad Institute + 2013-2018 Genome Research Ltd. + 2010-2011 Broad Institute License: MIT Files: samtools/* Copyright: 2009-2012 Broad Institute - 2008-2014 Genome Research Ltd. + 2008-2014 Genome Research Ltd. License: MIT Files: samtools/bam_cat.* Copyright: 2008-2009, 2011-2013 Genome Research Ltd. - 2010 Illumina, Inc. + 2010 Illumina, Inc. License: MIT Files: samtools/bam_color.* @@ -35,8 +35,8 @@ License: MIT Files: samtools/bam_index.* samtools/bam_mate.* Copyright: 2008-2014 Genome Research Ltd. - 2010-2011 Broad Institute - 2012-2013 Peter Cock, The James Hutton Institute + 2010-2011 Broad Institute + 2012-2013 Peter Cock, The James Hutton Institute License: MIT Files: samtools/misc/ace2sam.* @@ -45,8 +45,8 @@ License: MIT Files: samtools/padding.* Copyright: 2011-2012 Broad Institute - 2014 Genome Research Ltd. - 2012-2013 Peter Cock, The James Hutton Institute + 2014 Genome Research Ltd. + 2012-2013 Peter Cock, The James Hutton Institute License: MIT Files: win32/stdint.h @@ -59,10 +59,10 @@ License: LGPL-2.1+ Files: debian/* Copyright: - 2015-2016 Afif Elghraoui <[email protected]> - 2015 Jorge Soares <[email protected]> - 2014-2015 Charles Plessy <[email protected]> - 2014-2018 Andreas Tille <[email protected]> + 2015-2016 Afif Elghraoui <[email protected]> + 2015 Jorge Soares <[email protected]> + 2014-2015 Charles Plessy <[email protected]> + 2014-2018 Andreas Tille <[email protected]> License: MIT License: BSD-3-clause ===================================== debian/rules ===================================== @@ -54,10 +54,10 @@ pysam_data.%: clean-tests: pysam_data.clean cbcf_data.clean find . -name "*.pyc" -delete find . -name "*.pyxbldc" -delete - #find . -name "tmp_*" -delete # This deletes samtools/tmp_file.* which is needed to build successfully + find . -name "tmp_*.bam" -delete find . -name "*.bai*" -delete find . -name "*.cram*" -delete - #find . -name "*.bam" -delete # which deletes files tested + find . -name "pysam_uncompressed.bam" -delete rm -rf tests/pysam_test_work \ tests/example_htslib.gtf.gz.tbi \ tests/log.txt \ ===================================== debian/upstream/metadata ===================================== @@ -1,10 +1,12 @@ Registry: - - Name: OMICtools - Entry: OMICS_19073 - - Name: SciCrunch - Entry: NA - - Name: bio.tools - Entry: pysam - - Name: conda:bioconda - Entry: pysam -Repository: https://github.com/pysam-developers/pysam +- Name: OMICtools + Entry: OMICS_19073 +- Name: SciCrunch + Entry: NA +- Name: bio.tools + Entry: pysam +- Name: conda:bioconda + Entry: pysam +Repository: https://github.com/pysam-developers/pysam.git +Bug-Database: https://github.com/pysam-developers/pysam/issues +Repository-Browse: https://github.com/pysam-developers/pysam View it on GitLab: https://salsa.debian.org/med-team/python-pysam/compare/5b7040fc8921a49f8f6c47d4f3235b8b2359e301...9f8aea852ea0382c141675f28300d87256c562ff -- View it on GitLab: https://salsa.debian.org/med-team/python-pysam/compare/5b7040fc8921a49f8f6c47d4f3235b8b2359e301...9f8aea852ea0382c141675f28300d87256c562ff You're receiving this email because of your account on salsa.debian.org.
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