Andreas Tille pushed to branch master at Debian Med / clustalo
Commits: 9f4ac097 by Andreas Tille at 2020-01-10T11:42:52+01:00 Do not replace autogenerated jquery.js - - - - - b911c445 by Andreas Tille at 2020-01-10T11:43:17+01:00 routine-update: debhelper-compat 12 - - - - - e8fc7fe8 by Andreas Tille at 2020-01-10T11:43:24+01:00 routine-update: Standards-Version: 4.4.1 - - - - - 31dc2e2b by Andreas Tille at 2020-01-10T11:43:57+01:00 R-U: DEB_BUILD_OPTIONS allow override_dh_auto_test - - - - - 2e1bae3a by Andreas Tille at 2020-01-10T11:43:57+01:00 R-U: Trailing whitespace in debian/changelog - - - - - 8497bbed by Andreas Tille at 2020-01-10T11:44:00+01:00 Set field Upstream-Contact in debian/copyright. - - - - - 0c8dbc59 by Andreas Tille at 2020-01-10T11:44:03+01:00 Remove obsolete fields Contact, Name from debian/upstream/metadata (already present in machine-readable debian/copyright). - - - - - c62dedee by Andreas Tille at 2020-01-10T11:44:41+01:00 Fix typo - - - - - d3edeb9c by Andreas Tille at 2020-01-10T11:48:00+01:00 Upload to unstable - - - - - 7 changed files: - debian/changelog - − debian/compat - debian/control - debian/copyright - − debian/libclustalo-doc.linktrees - debian/rules - debian/upstream/metadata Changes: ===================================== debian/changelog ===================================== @@ -1,8 +1,20 @@ -clustalo (1.2.4-3) UNRELEASED; urgency=medium +clustalo (1.2.4-4) unstable; urgency=medium + [ Jelmer Vernooij ] * Use secure copyright file specification URI. - -- Jelmer Vernooij <[email protected]> Sat, 20 Oct 2018 13:51:21 +0000 + [ Andreas Tille ] + * Do not replace autogenerated jquery.js + Closes: #946297 + * debhelper-compat 12 + * Standards-Version: 4.4.1 + * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target + * Remove trailing whitespace in debian/changelog + * Set field Upstream-Contact in debian/copyright. + * Remove obsolete fields Contact, Name from debian/upstream/metadata + (already present in machine-readable debian/copyright). + + -- Andreas Tille <[email protected]> Fri, 10 Jan 2020 11:44:03 +0100 clustalo (1.2.4-2) unstable; urgency=medium ===================================== debian/compat deleted ===================================== @@ -1 +0,0 @@ -11 ===================================== debian/control ===================================== @@ -4,13 +4,12 @@ Uploaders: Olivier Sallou <[email protected]>, Andreas Tille <[email protected]> Section: science Priority: optional -Build-Depends: debhelper (>= 11~), - dh-linktree, +Build-Depends: debhelper-compat (= 12), libargtable2-dev, doxygen, graphviz, sphinx-common -Standards-Version: 4.1.5 +Standards-Version: 4.4.1 Vcs-Browser: https://salsa.debian.org/med-team/clustalo Vcs-Git: https://salsa.debian.org/med-team/clustalo.git Homepage: http://www.clustal.org/omega/ ===================================== debian/copyright ===================================== @@ -1,6 +1,7 @@ Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: clustalo Source: http://www.clustal.org/omega/ +Upstream-Contact: Fabian Sievers (UCD Dublin, Ireland) Files: * Copyright: 2010 UCD Dublin <[email protected]> ===================================== debian/libclustalo-doc.linktrees deleted ===================================== @@ -1 +0,0 @@ -replace usr/share/sphinx/themes/basic/static/jquery.js usr/share/doc/libclustalo-doc/api/html/jquery.js ===================================== debian/rules ===================================== @@ -7,13 +7,15 @@ export DEB_BUILD_MAINT_OPTIONS = hardening=+all %: - dh $@ --with linktree + dh $@ override_dh_auto_build-indep: # nothing to do here override_dh_auto_test-indep: - # nothing to do here +ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS))) + echo "Do not run build time test" +endif override_dh_auto_install-arch: dh_auto_install -a ===================================== debian/upstream/metadata ===================================== @@ -1,27 +1,25 @@ -Contact: Fabian Sievers (UCD Dublin, Ireland) -Name: Clustal Omega Reference: - - Author: > +- Author: > Fabian Sievers and Andreas Wilm and David Dineen and Toby J Gibson and Kevin Karplus and Weizhong Li and Rodrigo Lopez and Hamish McWilliam and Michael Remmert and Johannes Söding and Julie D Thompson and Desmond G Higgins - Title: > + Title: > Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega - Journal: Molecular Systems Biology - Volume: 7 - Number: 539 - Year: 2011 - PMID: 21988835 - DOI: 10.1038/msb.2011.75 - URL: http://www.nature.com/msb/journal/v7/n1/full/msb201175.html + Journal: Molecular Systems Biology + Volume: 7 + Number: 539 + Year: 2011 + PMID: 21988835 + DOI: 10.1038/msb.2011.75 + URL: http://www.nature.com/msb/journal/v7/n1/full/msb201175.html Registry: - - Name: bio.tools - Entry: NA - - Name: OMICtools - Entry: OMICS_00972 - - Name: SciCrunch - Entry: SCR_001591 - - Name: conda:bioconda - Entry: clustalo +- Name: bio.tools + Entry: NA +- Name: OMICtools + Entry: OMICS_00972 +- Name: SciCrunch + Entry: SCR_001591 +- Name: conda:bioconda + Entry: clustalo View it on GitLab: https://salsa.debian.org/med-team/clustalo/compare/bf71a15574575309afebfe951c434735d869b209...d3edeb9c61dff63efd30be559f19d417275068fc -- View it on GitLab: https://salsa.debian.org/med-team/clustalo/compare/bf71a15574575309afebfe951c434735d869b209...d3edeb9c61dff63efd30be559f19d417275068fc You're receiving this email because of your account on salsa.debian.org.
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