Andreas Tille pushed to branch master at Debian Med / smrtanalysis
Commits: 90333c26 by Andreas Tille at 2020-02-27T10:02:02+01:00 Afif removed himself from Uploaders, Add myself to Uploaders - - - - - 528b6597 by Andreas Tille at 2020-02-27T10:03:02+01:00 Move all packages affected by Python2 removal bugs to Suggests - - - - - e68ed3d5 by Andreas Tille at 2020-02-27T10:03:36+01:00 routine-update: Standards-Version: 4.5.0 - - - - - 6be50373 by Andreas Tille at 2020-02-27T10:03:36+01:00 routine-update: debhelper-compat 12 - - - - - 46fb2cc0 by Andreas Tille at 2020-02-27T10:03:46+01:00 R-U: Trailing whitespace in debian/copyright - - - - - 9ab39513 by Andreas Tille at 2020-02-27T10:03:46+01:00 R-U: Trailing whitespace in debian/rules - - - - - d371347f by Andreas Tille at 2020-02-27T10:03:46+01:00 routine-update: Add salsa-ci file - - - - - ee67939b by Andreas Tille at 2020-02-27T10:03:50+01:00 Use secure URI in Homepage field. Fixes: lintian: homepage-field-uses-insecure-uri See-also: https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html - - - - - 47385dd4 by Andreas Tille at 2020-02-27T10:03:51+01:00 Remove obsolete field Name from debian/upstream/metadata (already present in machine-readable debian/copyright). - - - - - ab80f3d0 by Andreas Tille at 2020-02-27T10:04:48+01:00 routine-update: Ready to upload to unstable - - - - - 7 changed files: - debian/changelog - − debian/compat - debian/control - debian/copyright - debian/rules - + debian/salsa-ci.yml - debian/upstream/metadata Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,20 @@ +smrtanalysis (0~20200227) unstable; urgency=medium + + * Afif removed himself from Uploaders + * Add myself to Uploaders + * Move all packages affected by Python2 removal bugs to Suggests + Closes: #945737 + * Standards-Version: 4.5.0 (routine-update) + * debhelper-compat 12 (routine-update) + * Remove trailing whitespace in debian/copyright (routine-update) + * Remove trailing whitespace in debian/rules (routine-update) + * Add salsa-ci file (routine-update) + * Use secure URI in Homepage field. + * Remove obsolete field Name from debian/upstream/metadata (already + present in machine-readable debian/copyright). + + -- Andreas Tille <[email protected]> Thu, 27 Feb 2020 10:03:51 +0100 + smrtanalysis (0~20180814) unstable; urgency=medium * Team upload. ===================================== debian/compat deleted ===================================== @@ -1 +0,0 @@ -11 ===================================== debian/control ===================================== @@ -1,25 +1,26 @@ Source: smrtanalysis Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Andreas Tille <[email protected]> Section: science Priority: optional -Build-Depends: debhelper (>= 11~) -Standards-Version: 4.2.0 +Build-Depends: debhelper-compat (= 12) +Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/smrtanalysis Vcs-Git: https://salsa.debian.org/med-team/smrtanalysis.git -Homepage: http://www.pacb.com/products-and-services/analytical-software/smrt-analysis/ +Homepage: https://www.pacb.com/products-and-services/analytical-software/smrt-analysis/ Package: smrtanalysis Architecture: all Depends: ${misc:Depends}, pbbamtools, - pbh5tools, - pbbarcode, - pbalign, blasr, - pbdagcon, - pbgenomicconsensus, - kineticstools, - falcon + pbdagcon +Suggests: pbh5tools, + pbbarcode, + pbalign, + pbgenomicconsensus, + kineticstools, + falcon Description: software suite for single molecule, real-time sequencing SMRT® Analysis is a powerful, open-source bioinformatics software suite available for analysis of DNA sequencing data from Pacific Biosciences’ @@ -34,15 +35,15 @@ Package: smrtanalysis-dev Architecture: all Section: libdevel Depends: ${misc:Depends}, - python-pbcore, - python-pbcommand, - python-pbconsensuscore | python3-pbconsensuscore, - python-pbgenomicconsensus, - python-pbh5tools, - python-pbalign, - python-kineticstools, + python3-pbcore, + python3-pbcommand, + python3-pbconsensuscore, libpbseq-dev, libpbbam-dev +Suggests: python-pbgenomicconsensus, + python-pbh5tools, + python-pbalign, + python-kineticstools, Description: develepment libraries for smrtanalysis SMRT® Analysis is a powerful, open-source bioinformatics software suite available for analysis of DNA sequencing data from Pacific Biosciences’ ===================================== debian/copyright ===================================== @@ -19,13 +19,13 @@ License: BSD-3-Clause without specific prior written permission. . THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR + ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE HOLDERS OR - CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, - EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, - PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR - PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF - LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING - NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS + CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, + EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, + PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR + PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF + LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING + NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. ===================================== debian/rules ===================================== @@ -3,4 +3,4 @@ #export DH_VERBOSE = 1 %: - dh $@ + dh $@ ===================================== debian/salsa-ci.yml ===================================== @@ -0,0 +1,4 @@ +--- +include: + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml ===================================== debian/upstream/metadata ===================================== @@ -1,4 +1,3 @@ -Name: SMRT Analysis Registry: - Name: OMICtools Entry: OMICS_05142 View it on GitLab: https://salsa.debian.org/med-team/smrtanalysis/-/compare/d25eddc1eecca4c414c5d74af2eb3602efabb1b5...ab80f3d091b34e5c08bcd3e0abb7673c9bb7606a -- View it on GitLab: https://salsa.debian.org/med-team/smrtanalysis/-/compare/d25eddc1eecca4c414c5d74af2eb3602efabb1b5...ab80f3d091b34e5c08bcd3e0abb7673c9bb7606a You're receiving this email because of your account on salsa.debian.org.
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