Andreas Tille pushed to branch master at Debian Med / fastqc
Commits: a1646d21 by Andreas Tille at 2020-04-07T08:38:37+02:00 Provide run-unit-test as user example - - - - - 5 changed files: - + debian/README.test - debian/changelog - debian/docs - debian/fastqc.examples - debian/tests/run-unit-test Changes: ===================================== debian/README.test ===================================== @@ -0,0 +1,8 @@ +Notes on how this package can be tested. +──────────────────────────────────────── + +This package can be tested by running the provided test: + + cd examples && bash run-unit-test + +in order to confirm its integrity. ===================================== debian/changelog ===================================== @@ -1,3 +1,9 @@ +fastqc (0.11.9+dfsg-4) UNRELEASED; urgency=medium + + * Provide run-unit-test as user example + + -- Andreas Tille <[email protected]> Tue, 07 Apr 2020 08:30:38 +0200 + fastqc (0.11.9+dfsg-3) unstable; urgency=medium [ tony mancill ] ===================================== debian/docs ===================================== @@ -1 +1,2 @@ README.txt +debian/README.test ===================================== debian/fastqc.examples ===================================== @@ -1 +1,3 @@ debian/tests.fastqc/* +debian/tests/run-unit-test +debian/tests/*.txt ===================================== debian/tests/run-unit-test ===================================== @@ -2,7 +2,6 @@ set -e pkg="fastqc" -tests_dir="$PWD/debian/tests" test_failures=0 if [ "$AUTOPKGTEST_TMP" = "" ] ; then @@ -19,7 +18,7 @@ find . -name "*.gz" -exec gunzip \{\} \; for sample in example.fastq toy_sam.sam toy_bam.bam ; do /usr/bin/fastqc --extract "$sample" result="${sample%%.*}_fastqc" - expected="${tests_dir}/${result}_expected_summary.txt" + expected="${result}_expected_summary.txt" if ! diff -q "${result}/summary.txt" ${expected} 2>/dev/null ; then (( test_failures += 1 )) cat <<EOT View it on GitLab: https://salsa.debian.org/med-team/fastqc/-/commit/a1646d2190c3ae73692c715a0b9f59fd32a6e8f4 -- View it on GitLab: https://salsa.debian.org/med-team/fastqc/-/commit/a1646d2190c3ae73692c715a0b9f59fd32a6e8f4 You're receiving this email because of your account on salsa.debian.org.
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