Andreas Tille pushed to branch master at Debian Med / soapaligner
Commits: 2764a6c5 by Andreas Tille at 2020-04-17T11:38:49+02:00 Homepage has vanished - point to web archive to reflect this - - - - - 065b6373 by Andreas Tille at 2020-04-17T11:40:36+02:00 Deactivated watch file - - - - - ad969a18 by Andreas Tille at 2020-04-17T11:42:34+02:00 Document vanished homepage in README.Debian - - - - - d392970e by Andreas Tille at 2020-04-17T11:43:49+02:00 routine-update: Standards-Version: 4.5.0 - - - - - 1f7655b3 by Andreas Tille at 2020-04-17T11:43:49+02:00 routine-update: debhelper-compat 12 - - - - - 4bcbdf83 by Andreas Tille at 2020-04-17T11:43:54+02:00 R-U: Trailing whitespace in debian/control - - - - - 0cfd17d4 by Andreas Tille at 2020-04-17T11:43:54+02:00 R-U: Trailing whitespace in debian/rules - - - - - 86475f9c by Andreas Tille at 2020-04-17T11:43:54+02:00 routine-update: Add salsa-ci file - - - - - de658b15 by Andreas Tille at 2020-04-17T11:43:54+02:00 routine-update: Rules-Requires-Root: no - - - - - ae009835 by Andreas Tille at 2020-04-17T11:43:55+02:00 Set field Upstream-Contact in debian/copyright. - - - - - a11accf6 by Andreas Tille at 2020-04-17T11:45:00+02:00 Remove obsolete field Contact from debian/upstream/metadata (already present in machine-readable debian/copyright). - - - - - 331cf08c by Andreas Tille at 2020-04-17T11:45:50+02:00 routine-update: Ready to upload to unstable - - - - - 9 changed files: - debian/README.Debian - debian/changelog - − debian/compat - debian/control - debian/copyright - debian/rules - + debian/salsa-ci.yml - debian/upstream/metadata - debian/watch Changes: ===================================== debian/README.Debian ===================================== @@ -1,6 +1,12 @@ soap2 for Debian ---------------- -The authors of this package demand the amd64 platform. +Upstream site vanished. Last seen on web archive - -- Steffen Moeller <[email protected]> Sat, 21 Apr 2012 22:45:08 +0200 + https://web.archive.org/web/20190127081222/http://soap.genomics.org.cn/soapaligner.html + +The latest upstream version + Release 2.21 , 02-14-2011 +was only in binary form and can not be packaged. + + -- Andreas Tille <[email protected]> Fri, 17 Apr 2020 11:38:18 +0200 ===================================== debian/changelog ===================================== @@ -1,3 +1,20 @@ +soapaligner (2.20-4) unstable; urgency=medium + + * Team upload. + * Homepage has vanished - point to web archive to reflect this + * Deactivated watch file + * Standards-Version: 4.5.0 (routine-update) + * debhelper-compat 12 (routine-update) + * Remove trailing whitespace in debian/control (routine-update) + * Remove trailing whitespace in debian/rules (routine-update) + * Add salsa-ci file (routine-update) + * Rules-Requires-Root: no (routine-update) + * Set field Upstream-Contact in debian/copyright. + * Remove obsolete field Contact from debian/upstream/metadata (already + present in machine-readable debian/copyright). + + -- Andreas Tille <[email protected]> Fri, 17 Apr 2020 11:45:00 +0200 + soapaligner (2.20-3) unstable; urgency=medium * Team upload. ===================================== debian/compat deleted ===================================== @@ -1 +0,0 @@ -11 ===================================== debian/control ===================================== @@ -3,11 +3,12 @@ Maintainer: Debian Med Packaging Team <[email protected]. Uploaders: Steffen Moeller <[email protected]> Section: science Priority: optional -Build-Depends: debhelper (>= 11~) -Standards-Version: 4.1.4 +Build-Depends: debhelper-compat (= 12) +Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/soapaligner Vcs-Git: https://salsa.debian.org/med-team/soapaligner.git -Homepage: http://soap.genomics.org.cn/soapaligner.html +Homepage: https://web.archive.org/web/20190127081222/http://soap.genomics.org.cn/soapaligner.html +Rules-Requires-Root: no Package: soapaligner Architecture: any-amd64 x32 @@ -15,7 +16,7 @@ Depends: ${shlibs:Depends}, ${misc:Depends} Description: aligner of short reads of next generation sequencers This package addresses a common problem in bioinformatics that has - become routine now also in clinical research: the assembly and + become routine now also in clinical research: the assembly and comparison of the very long genomic DNA sequences from many short reads that the machines provide. . ===================================== debian/copyright ===================================== @@ -1,6 +1,7 @@ Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: SOAPaligner Source: http://soap.genomics.org.cn/soapaligner.html +Upstream-Contact: [email protected] Files: * Copyright: 2004 Wong Chi Kwong ===================================== debian/rules ===================================== @@ -11,4 +11,4 @@ export CXXFLAGS:=-flto $(shell dpkg-buildflags --get CXXFLAGS) export LDFLAGS:=-Wl,-flto $(shell dpkg-buildflags --get LDFLAGS) %: - dh $@ + dh $@ ===================================== debian/salsa-ci.yml ===================================== @@ -0,0 +1,4 @@ +--- +include: + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml ===================================== debian/upstream/metadata ===================================== @@ -1,4 +1,3 @@ -Contact: [email protected] Reference: DOI: 10.1093/bioinformatics/btn025 Eprint: http://bioinformatics.oxfordjournals.org/content/24/5/713.full.pdf+html ===================================== debian/watch ===================================== @@ -1,3 +1,7 @@ version=4 -http://soap.genomics.org.cn/soapaligner.html down/SOAPaligner-v(\d[.\d]+)-src.tar.gz +# Upstream site vanished +opts=dversionmangle=s/.*/0.No-Site/ \ + https://people.debian.org/~eriberto/ FakeWatchNoUpstreamSiteForThisPackage-(\d\S+)\.gz + +# http://soap.genomics.org.cn/soapaligner.html down/SOAPaligner-v(\d[.\d]+)-src.tar.gz View it on GitLab: https://salsa.debian.org/med-team/soapaligner/-/compare/afd7342c143f36f61905e4c9023b1bb902d54603...331cf08ce13bd48a121c95fe5e7b0fb4273b08a0 -- View it on GitLab: https://salsa.debian.org/med-team/soapaligner/-/compare/afd7342c143f36f61905e4c9023b1bb902d54603...331cf08ce13bd48a121c95fe5e7b0fb4273b08a0 You're receiving this email because of your account on salsa.debian.org.
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