Andreas Tille pushed to branch master at Debian Med / python-nanoget
Commits: 4a499fc6 by Andreas Tille at 2020-04-24T16:10:16+02:00 Fix description - - - - - 1 changed file: - debian/control Changes: ===================================== debian/control ===================================== @@ -28,12 +28,12 @@ Description: extract information from Oxford Nanopore sequencing data and alignm . Data can be presented in the following formats, using the following functions: . - * sorted bam file process_bam (bamfile, threads) - * standard fastq file process_fastq_plain (fastqfile, 'threads') - * fastq file with metadata from MinKNOW or Albacore process_fastq_rich - (fastqfile) - * sequencing_summary file generated by Albacore process_summary - (sequencing_summary.txt, 'readtype') + * sorted bam file process_bam(bamfile, threads) + * standard fastq file process_fastq_plain(fastqfile, 'threads') + * fastq file with metadata from MinKNOW or Albacore + process_fastq_rich(fastqfile) + * sequencing_summary file generated by Albacore + process_summary(sequencing_summary.txt, 'readtype') . Fastq files can be compressed using gzip, bzip2 or bgzip. The data is returned as a pandas DataFrame with standardized headernames for View it on GitLab: https://salsa.debian.org/med-team/python-nanoget/-/commit/4a499fc6404dfaae93f92f74604190c8dcd23f85 -- View it on GitLab: https://salsa.debian.org/med-team/python-nanoget/-/commit/4a499fc6404dfaae93f92f74604190c8dcd23f85 You're receiving this email because of your account on salsa.debian.org.
_______________________________________________ debian-med-commit mailing list [email protected] https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
