Andreas Tille pushed to branch master at Debian Med / pbalign
Commits: 6619322c by Andreas Tille at 2020-05-12T15:25:57+00:00 Update changelog - valid syntax to reduce noise in metadata gatherer even if package is removed - - - - - 1 changed file: - debian/changelog Changes: ===================================== debian/changelog ===================================== @@ -11,47 +11,8 @@ pbalign (0.3.2-2) UNRELEASED; urgency=medium * Set upstream metadata fields: Repository, Repository-Browse. * Drop pbh5tools from Recommends since its not available any more -Not supported by latest pbcore and pbcommand any more: - -pylint --errors-only pbalign -************* Module pbalign.pbalignrunner -pbalign/pbalignrunner.py:50:0: E0611: No name 'pbparser_runner' in module 'pbcommand.cli' (no-name-in-module) -************* Module pbalign.options -pbalign/options.py:40:0: E0611: No name 'get_pbparser' in module 'pbcommand.models' (no-name-in-module) -************* Module pbalign.alignservice.gmap -pbalign/alignservice/gmap.py:40:0: E0611: No name 'Process' in module 'pbcore.util' (no-name-in-module) -pbalign/alignservice/gmap.py:40:0: E0401: Unable to import 'pbcore.util.Process' (import-error) -************* Module pbalign.alignservice.bowtie -pbalign/alignservice/bowtie.py:39:0: E0611: No name 'Process' in module 'pbcore.util' (no-name-in-module) -pbalign/alignservice/bowtie.py:39:0: E0401: Unable to import 'pbcore.util.Process' (import-error) -************* Module pbalign.alignservice.fastabasedalign -pbalign/alignservice/fastabasedalign.py:40:0: E0611: No name 'Process' in module 'pbcore.util' (no-name-in-module) -pbalign/alignservice/fastabasedalign.py:40:0: E0401: Unable to import 'pbcore.util.Process' (import-error) -************* Module pbalign.tasks.align_minorvariants -pbalign/tasks/align_minorvariants.py:9:0: E0611: No name 'get_pbparser' in module 'pbcommand.models' (no-name-in-module) -pbalign/tasks/align_minorvariants.py:10:0: E0611: No name 'pbparser_runner' in module 'pbcommand.cli' (no-name-in-module) -************* Module pbalign.utils.RgnH5IO -pbalign/utils/RgnH5IO.py:13:0: E0611: No name 'BasH5IO' in module 'pbcore.io' (no-name-in-module) -pbalign/utils/RgnH5IO.py:13:0: E0401: Unable to import 'pbcore.io.BasH5IO' (import-error) -pbalign/utils/RgnH5IO.py:56:0: E1126: Sequence index is not an int, slice, or instance with __index__ (invalid-sequence-index) -************* Module pbalign.utils.fileutil -pbalign/utils/fileutil.py:42:0: E0611: No name 'Process' in module 'pbcore.util' (no-name-in-module) -pbalign/utils/fileutil.py:42:0: E0401: Unable to import 'pbcore.util.Process' (import-error) -************* Module pbalign.utils.progutil -pbalign/utils/progutil.py:37:0: E0611: No name 'Process' in module 'pbcore.util' (no-name-in-module) -pbalign/utils/progutil.py:37:0: E0401: Unable to import 'pbcore.util.Process' (import-error) -************* Module pbalign.tools.createChemistryHeader -pbalign/tools/createChemistryHeader.py:14:0: E0611: No name 'BasH5IO' in module 'pbcore.io' (no-name-in-module) -************* Module pbalign.tools.loadChemistry -pbalign/tools/loadChemistry.py:71:14: E0602: Undefined variable 'BasH5Reader' (undefined-variable) -************* Module pbalign.tools.mask_aligned_reads -pbalign/tools/mask_aligned_reads.py:12:0: E0611: No name 'CmpH5Reader' in module 'pbcore.io' (no-name-in-module) -pbalign/tools/mask_aligned_reads.py:12:0: E0611: No name 'EmptyCmpH5Error' in module 'pbcore.io' (no-name-in-module) -pbalign/tools/mask_aligned_reads.py:124:13: E1123: Unexpected keyword argument 'version' in constructor call (unexpected-keyword-arg) -make: *** [Makefile:19: pylint] Fehler 2 - - -Issue tracker for https://github.com/PacificBiosciences/pbalign/ is disabled - so no idea how to ask for updates + Removed since not supported by latest pbcore and pbcommand any more: + Issue tracker for https://github.com/PacificBiosciences/pbalign/ is disabled - so no idea how to ask for updates -- Andreas Tille <[email protected]> Fri, 13 Dec 2019 10:59:33 +0100 View it on GitLab: https://salsa.debian.org/med-team/pbalign/-/commit/6619322cfadbaa61ce0561b4a0dbdc7cb726537b -- View it on GitLab: https://salsa.debian.org/med-team/pbalign/-/commit/6619322cfadbaa61ce0561b4a0dbdc7cb726537b You're receiving this email because of your account on salsa.debian.org.
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