Andreas Tille pushed to branch master at Debian Med / norsp
Commits: e5fa230f by Andreas Tille at 2020-06-04T08:25:35+02:00 routine-update: Standards-Version: 4.5.0 - - - - - 25a42efd by Andreas Tille at 2020-06-04T08:25:35+02:00 routine-update: debhelper-compat 13 - - - - - 3259bf61 by Andreas Tille at 2020-06-04T08:25:49+02:00 routine-update: Remove trailing whitespace in debian/changelog - - - - - 0e7e6029 by Andreas Tille at 2020-06-04T08:25:49+02:00 routine-update: Add salsa-ci file - - - - - 59309df4 by Andreas Tille at 2020-06-04T08:25:50+02:00 routine-update: Rules-Requires-Root: no - - - - - 6d79f40e by Andreas Tille at 2020-06-04T08:25:51+02:00 Trim trailing whitespace. Fixes: lintian: file-contains-trailing-whitespace See-also: https://lintian.debian.org/tags/file-contains-trailing-whitespace.html - - - - - 5fb8df13 by Andreas Tille at 2020-06-04T08:33:39+02:00 Make sure norsp does not enforce pp-popularity-contest - - - - - 0030963b by Andreas Tille at 2020-06-04T08:37:20+02:00 Upload to unstable - - - - - 7 changed files: - debian/changelog - − debian/compat - debian/control - + debian/patches/no_pp_popcon_cnt.patch - + debian/patches/series - debian/rules - + debian/salsa-ci.yml Changes: ===================================== debian/changelog ===================================== @@ -1,4 +1,6 @@ -norsp (1.0.6-5) UNRELEASED; urgency=medium +norsp (1.0.6-5) unstable; urgency=medium + + * Team upload. [ Steffen Moeller ] * d/u/metadata: yamllint @@ -9,6 +11,15 @@ norsp (1.0.6-5) UNRELEASED; urgency=medium * Add autopkgtests * Install docs + [ Andreas Tille ] + * Standards-Version: 4.5.0 (routine-update) + * debhelper-compat 13 (routine-update) + * Remove trailing whitespace in debian/changelog (routine-update) + * Add salsa-ci file (routine-update) + * Rules-Requires-Root: no (routine-update) + * Trim trailing whitespace. + * Make sure norsp does not enforce pp-popularity-contest + -- Pranav Ballaney <[email protected]> Thu, 04 Jun 2020 07:04:12 +0530 norsp (1.0.6-4) unstable; urgency=medium @@ -47,19 +58,19 @@ norsp (1.0.6-1) unstable; urgency=low norsp (1.0.5-1) unstable; urgency=low - * New upstream release (Closes: #684856) + * New upstream release (Closes: #684856) -- Laszlo Kajan <[email protected]> Tue, 14 Aug 2012 18:49:50 +0200 norsp (1.0.4-1) unstable; urgency=low - * Initial release (Closes: #680367) + * Initial release (Closes: #680367) -- Eva Reisinger <[email protected]> Fri, 13 Jul 2012 11:53:07 +0000 norsp (1.0.3) unstable; urgency=low - * recommends now on ncoils (>= 2002-3) + * recommends now on ncoils (>= 2002-3) -- Laszlo Kajan <[email protected]> Thu, 27 Oct 2011 20:22:02 +0200 ===================================== debian/compat deleted ===================================== @@ -1 +0,0 @@ -11 ===================================== debian/control ===================================== @@ -5,21 +5,22 @@ Uploaders: Laszlo Kajan <[email protected]>, Andreas Tille <[email protected]> Section: science Priority: optional -Build-Depends: debhelper (>= 11~) -Standards-Version: 4.2.1 +Build-Depends: debhelper-compat (= 13) +Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/norsp Vcs-Git: https://salsa.debian.org/med-team/norsp.git Homepage: https://rostlab.org/owiki/index.php/NORSp_-_predictor_of_NOn-Regular_Secondary_Structure +Rules-Requires-Root: no Package: norsp Architecture: all Depends: ${misc:Depends}, - ${perl:Depends}, - pp-popularity-contest + ${perl:Depends} Recommends: blast2, librg-utils-perl, profphd, ncoils +Suggests: pp-popularity-contest Description: predictor of non-regular secondary structure NORSp is a publicly available predictor for disordered regions in proteins. Specifically, it predicts long regions with no regular secondary structure. ===================================== debian/patches/no_pp_popcon_cnt.patch ===================================== @@ -0,0 +1,26 @@ +Description: Do not force users to install pp-popularity-contest +Author: Andreas Tille <[email protected]> +Last-Update: Thu, 04 Jun 2020 07:04:12 +0530 + +--- a/norsp ++++ b/norsp +@@ -7,7 +7,7 @@ + use Getopt::Long; + + # popularity contest +-if( system('pp_popcon_cnt', '-p', 'norsp') == -1 ){ warn("The Rost Lab recommends you install the pp-popularity-contest package that provides pp_popcon_cnt:\n\nsudo apt-get install pp-popularity-contest\n"); } ++#if( system('pp_popcon_cnt', '-p', 'norsp') == -1 ){ warn("The Rost Lab recommends you install the pp-popularity-contest package that provides pp_popcon_cnt:\n\nsudo apt-get install pp-popularity-contest\n"); } + + &init(); + +--- a/norsp.spec ++++ b/norsp.spec +@@ -7,7 +7,7 @@ Group: Applications/Science + URL: https://rostlab.org/owiki/index.php/NORSp_-_predictor_of_NOn-Regular_Secondary_Structure + Source0: %{name}-%{version}.tar.gz + BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root +-Requires: pp-popularity-contest, profphd, profphd-utils, coiledcoils ++Requires: profphd, profphd-utils, coiledcoils + + %description + Many structurally flexible regions play important roles in biological processes. It has been shown that extended loopy regions are very abundant in nature, and that ===================================== debian/patches/series ===================================== @@ -0,0 +1 @@ +no_pp_popcon_cnt.patch ===================================== debian/rules ===================================== @@ -9,4 +9,3 @@ override_dh_compress: %: dh $@ - ===================================== debian/salsa-ci.yml ===================================== @@ -0,0 +1,4 @@ +--- +include: + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml View it on GitLab: https://salsa.debian.org/med-team/norsp/-/compare/fd64e3a3e87efb082964a02d63c6bfa6f1b02a10...0030963b047baf2e08442721b07246ff7d366cc5 -- View it on GitLab: https://salsa.debian.org/med-team/norsp/-/compare/fd64e3a3e87efb082964a02d63c6bfa6f1b02a10...0030963b047baf2e08442721b07246ff7d366cc5 You're receiving this email because of your account on salsa.debian.org.
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