Andreas Tille pushed to branch master at Debian Med / flye
Commits: c221816b by Andreas Tille at 2020-06-05T18:18:37+02:00 Install files - - - - - 6 changed files: - debian/control - debian/copyright - + debian/docs - + debian/install - debian/patches/use_debian_packaged_libs.patch - debian/rules Changes: ===================================== debian/control ===================================== @@ -19,6 +19,7 @@ Homepage: https://github.com/fenderglass/Flye Package: flye Architecture: any Depends: ${shlibs:Depends}, + ${python3:Depends}, ${misc:Depends} Description: de novo assembler for single molecule sequencing reads using repeat graphs Flye is a de novo assembler for single molecule sequencing reads, such ===================================== debian/copyright ===================================== @@ -11,7 +11,7 @@ Copyright: 2016-2019, The Regents of the University of California Mikhail Kolmogorov, Jeffrey Yuan, Yu Lin, Evgeny Polevikov License: BSD-3-Clause -Files: lib/interval_tree +Files: lib/interval_tree/* Copyright: 2011 Erik Garrison License: MIT Permission is hereby granted, free of charge, to any person obtaining a copy of @@ -32,7 +32,7 @@ License: MIT OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. -Files: lib/libcuckoo +Files: lib/libcuckoo/* Copyright: 2013, Carnegie Mellon University and Intel Corporation License: Apache-2.0 Licensed under the Apache License, Version 2.0 (the "License"); ===================================== debian/docs ===================================== @@ -0,0 +1,4 @@ +docs/FAQ* +docs/graph_example.png +docs/USAGE* +README* ===================================== debian/install ===================================== @@ -0,0 +1 @@ +bin usr ===================================== debian/patches/use_debian_packaged_libs.patch ===================================== @@ -38,3 +38,14 @@ Description: use Debian packaged libminimap2 and liblemon - rm ${BIN_DIR}/flye-samtools + rm -f ${BIN_DIR}/flye-minimap2 + rm -f ${BIN_DIR}/flye-samtools +--- a/setup.py ++++ b/setup.py +@@ -55,7 +55,7 @@ class MakeInstall(SetuptoolsInstall): + + build_dir = os.path.join(script_dir, "bin") + install_dir = self.install_scripts +- bin_files = ['flye-modules', 'flye-minimap2', 'flye-samtools'] ++ bin_files = ['flye-modules'] + for file in bin_files: + if not os.path.isfile(os.path.join(build_dir, file)): + sys.exit('Error: binary not found: ' + file) ===================================== debian/rules ===================================== @@ -4,28 +4,18 @@ export LC_ALL=C.UTF-8 include /usr/share/dpkg/default.mk -# this provides: -# DEB_SOURCE: the source package name -# DEB_VERSION: the full version of the package (epoch + upstream vers. + revision) -# DEB_VERSION_EPOCH_UPSTREAM: the package's version without the Debian revision -# DEB_VERSION_UPSTREAM_REVISION: the package's version without the Debian epoch -# DEB_VERSION_UPSTREAM: the package's upstream version -# DEB_DISTRIBUTION: the distribution(s) listed in the current entry of debian/changelog -# SOURCE_DATE_EPOCH: the source release date as seconds since the epoch, as -# specified by <https://reproducible-builds.org/specs/source-date-epoch/> # for hardening you might like to uncomment this: # export DEB_BUILD_MAINT_OPTIONS=hardening=+all %: - dh $@ + dh $@ --with python3 --buildsystem=pybuild + +override_dh_installchangelogs: + dh_installchangelogs docs/NEWS.md ### When overriding auto_test make sure DEB_BUILD_OPTIONS will be respected #override_dh_auto_test: #ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS))) # do_stuff_for_testing #endif - -### If you **really** can not use uscan (even not with mode=git) use a debian/get-orig-script -#get-orig-source: -# . debian/get-orig-source View it on GitLab: https://salsa.debian.org/med-team/flye/-/commit/c221816bf964bd6eaca1d38d128328502a1ec2e7 -- View it on GitLab: https://salsa.debian.org/med-team/flye/-/commit/c221816bf964bd6eaca1d38d128328502a1ec2e7 You're receiving this email because of your account on salsa.debian.org.
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