Andreas Tille pushed to branch master at Debian Med / nanosv
Commits: c56cb0fc by Andreas Tille at 2020-06-08T14:24:19+02:00 Do not require configparser which is part of Python3 - - - - - efa86fae by Andreas Tille at 2020-06-08T14:24:31+02:00 Fix depends - - - - - 4 changed files: - debian/control - debian/patches/fix_setup.patch - + debian/patches/python3_has_buildin_configparser.patch - debian/patches/series Changes: ===================================== debian/control ===================================== @@ -1,19 +1,24 @@ Source: nanosv -Section: science -Priority: optional Maintainer: Debian Med Packaging Team <[email protected]> Uploaders: Steffen Moeller <[email protected]> -Build-Depends: debhelper-compat (= 12), dh-python, python3-setuptools, python3-all +Section: science +Priority: optional +Build-Depends: debhelper-compat (= 12), + dh-python, + python3-setuptools, + python3-all Standards-Version: 4.5.0 -Homepage: https://github.com/mroosmalen/nanosv Vcs-Browser: https://salsa.debian.org/med-team/nanosv Vcs-Git: https://salsa.debian.org/med-team/nanosv.git +Homepage: https://github.com/mroosmalen/nanosv Rules-Requires-Root: no -#Testsuite: autopkgtest-pkg-python Package: nanosv Architecture: all -Depends: ${python3:Depends}, ${misc:Depends} +Depends: ${python3:Depends}, + ${misc:Depends}, + python3-pysam, + python3-vcf Description: structural variant caller for nanopore data NanoSV is a software package that can be used to identify structural genomic variations in long-read sequencing data, such as data produced ===================================== debian/patches/fix_setup.patch ===================================== @@ -1,3 +1,7 @@ +Author: Steffen Möller +Last-Update: 2020-06-07 17:34:55 +0200 +Description: Fix typo in setup.py + Index: nanosv-1.2.4/setup.py =================================================================== --- nanosv-1.2.4.orig/setup.py ===================================== debian/patches/python3_has_buildin_configparser.patch ===================================== @@ -0,0 +1,15 @@ +Author: Andreas Tille <[email protected]> +Last-Update: Mon, 08 Jun 2020 14:23:48 +0200 +Description: Do not require configparser which is part of Python3 + +--- a/setup.py ++++ b/setup.py +@@ -27,7 +27,7 @@ setup( name='NanoSV', + author_email='[email protected]', + license='MIT', + python_requires='>=3', +- install_requires=['pysam>=0.11','pyvcf','configparser'], ++ install_requires=['pysam>=0.11','pyvcf'], + packages=['nanosv','nanosv.utils','nanosv.classes'], + package_data={'nanosv': ['config.ini','bedfiles/*.bed']}, + including_package_data=True, ===================================== debian/patches/series ===================================== @@ -1 +1,2 @@ fix_setup.patch +python3_has_buildin_configparser.patch View it on GitLab: https://salsa.debian.org/med-team/nanosv/-/compare/09f61d1ac5423a2117119df7d38cbf89c059a703...efa86faebd73195e36429578841a88807776ae1b -- View it on GitLab: https://salsa.debian.org/med-team/nanosv/-/compare/09f61d1ac5423a2117119df7d38cbf89c059a703...efa86faebd73195e36429578841a88807776ae1b You're receiving this email because of your account on salsa.debian.org.
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