Andreas Tille pushed to branch master at Debian Med / tombo
Commits: 16028678 by Andreas Tille at 2020-06-15T22:39:56+02:00 Add (Build-)Depends until mappy is really needed - - - - - 5 changed files: - debian/changelog - debian/control - + debian/patches/no_future.patch - + debian/patches/series - debian/rules Changes: ===================================== debian/changelog ===================================== @@ -1,5 +1,7 @@ tombo (1.5.1-1) UNRELEASED; urgency=medium * Initial release (Closes: #<bug>) + TODO: python3-mappy (from minimap2) + blocked by https://salsa.debian.org/med-team/ksw2 -- Andreas Tille <[email protected]> Mon, 15 Jun 2020 11:13:59 +0200 ===================================== debian/control ===================================== @@ -3,7 +3,13 @@ Maintainer: Debian Med Packaging Team <[email protected]. Uploaders: Andreas Tille <[email protected]> Section: science Priority: optional -Build-Depends: debhelper-compat (= 13) +Build-Depends: debhelper-compat (= 13), + dh-python, + python3-all-dev, + python3-setuptools, + cython3, + python3-numpy, + python3-tqdm Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/tombo Vcs-Git: https://salsa.debian.org/med-team/tombo.git @@ -12,7 +18,13 @@ Homepage: https://github.com/nanoporetech/tombo Package: tombo Architecture: any Depends: ${shlibs:Depends}, - ${misc:Depends} + ${misc:Depends}, + ${python3:Depends}, + python3-h5py, + python3-numpy, + python3-scipy, + python3-mappy, + python3-tqdm Description: identification of modified nucleotides from raw nanopore sequencing data Tombo is a suite of tools primarily for the identification of modified nucleotides from nanopore sequencing data. Tombo also provides tools for ===================================== debian/patches/no_future.patch ===================================== @@ -0,0 +1,16 @@ +--- a/setup.py ++++ b/setup.py +@@ -1,4 +1,3 @@ +-from __future__ import unicode_literals + + import os + import sys +@@ -58,7 +57,7 @@ setup( + version = __version__, + packages = ["tombo"], + install_requires = ['h5py', 'numpy', 'scipy', 'cython', +- 'setuptools >= 18.0', 'mappy >= 2.10', 'future', 'tqdm'], ++ 'setuptools >= 18.0', 'mappy >= 2.10', 'tqdm'], + extras_require={'full':extras_require}, + + author = "Marcus Stoiber", ===================================== debian/patches/series ===================================== @@ -0,0 +1 @@ +no_future.patch ===================================== debian/rules ===================================== @@ -18,14 +18,10 @@ include /usr/share/dpkg/default.mk # export DEB_BUILD_MAINT_OPTIONS=hardening=+all %: - dh $@ + dh $@ --with python3 --buildsystem=pybuild ### When overriding auto_test make sure DEB_BUILD_OPTIONS will be respected #override_dh_auto_test: #ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS))) # do_stuff_for_testing #endif - -### If you **really** can not use uscan (even not with mode=git) use a debian/get-orig-script -#get-orig-source: -# . debian/get-orig-source View it on GitLab: https://salsa.debian.org/med-team/tombo/-/commit/160286781eb4373ae63afcf7b9a84a89c9700a4f -- View it on GitLab: https://salsa.debian.org/med-team/tombo/-/commit/160286781eb4373ae63afcf7b9a84a89c9700a4f You're receiving this email because of your account on salsa.debian.org.
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