Andreas Tille pushed to branch master at Debian Med / libsonlib
Commits: 78ef16a2 by Andreas Tille at 2020-06-16T08:48:43+02:00 Use Debian packaged quicktree - - - - - 4ec231e4 by Andreas Tille at 2020-06-16T08:51:14+02:00 Remove some cruft - - - - - 725e96e9 by Andreas Tille at 2020-06-16T08:51:20+02:00 New upstream version 1.1+git20170108.b849f78+dfsg - - - - - 2fdf58ac by Andreas Tille at 2020-06-16T08:51:21+02:00 Update upstream source from tag 'upstream/1.1+git20170108.b849f78+dfsg' Update to upstream version '1.1+git20170108.b849f78+dfsg' with Debian dir 156f9393328f8a1d093bdaf1c1fbee05cf4dfdf4 - - - - - 8 changed files: - − .gitignore - − .gitmodules - debian/changelog - debian/control - debian/copyright - + debian/patches/series - + debian/patches/use_debian_packaged_quicktree.patch - − src/sonLib/.bioio.py.swp Changes: ===================================== .gitignore deleted ===================================== @@ -1,7 +0,0 @@ -bin/* -lib/* -bin/ -lib/ -*.pyc -*.o -*.a ===================================== .gitmodules deleted ===================================== ===================================== debian/changelog ===================================== @@ -1,6 +1,5 @@ libsonlib (1.1+git20170108.b849f78+dfsg-1) UNRELEASED; urgency=medium * Initial release (Closes: #<bug>) - TODO: https://github.com/khowe/quicktree -- Andreas Tille <[email protected]> Tue, 16 Jun 2020 08:23:45 +0200 ===================================== debian/control ===================================== @@ -3,7 +3,10 @@ Section: science Priority: optional Maintainer: Debian Med Packaging Team <[email protected]> Uploaders: Andreas Tille <[email protected]> -Build-Depends: debhelper-compat (= 13) +Build-Depends: debhelper-compat (= 13), + dh-python, + python3-all-dev, + python3-setuptools, Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/libsonlib Vcs-Git: https://salsa.debian.org/med-team/libsonlib.git @@ -12,7 +15,9 @@ Homepage: https://github.com/ArtRand/sonLib Package: libsonlib-dev Section: libdevel Architecture: any -Depends: ${shlibs:Depends}, ${misc:Depends} +Depends: ${shlibs:Depends}, + ${misc:Depends}, + quicktree Description: compact C/Python library for sequence analysis in bioinformatics SonLib is a small general purpose library for C and Python for sequence analysis with focus on bioinformatics. ===================================== debian/copyright ===================================== @@ -2,6 +2,8 @@ Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: sonlib Source: https://github.com/ArtRand/sonLib Files-Excluded: externalTools/quicktree* + */*.swp + */.git* Files: * Copyright: 2009-2017 by Benedict Paten <[email protected]> ===================================== debian/patches/series ===================================== @@ -0,0 +1 @@ +use_debian_packaged_quicktree.patch ===================================== debian/patches/use_debian_packaged_quicktree.patch ===================================== @@ -0,0 +1,26 @@ +--- a/externalTools/Makefile ++++ b/externalTools/Makefile +@@ -1,20 +1,14 @@ + include ../include.mk +-.PHONY: all clean cutestM cutestM.clean quicktreeM.clean ++.PHONY: all clean cutestM cutestM.clean + + libPath = ../lib + +-all : cutestM quicktreeM ++all : cutestM + +-clean : cutestM.clean quicktreeM.clean ++clean : cutestM.clean + + cutestM : + cd cutest && make all + + cutestM.clean : + cd cutest && make clean +- +-quicktreeM : +- cd quicktree_1.1 && make all +- +-quicktreeM.clean : +- cd quicktree_1.1 && make clean ===================================== src/sonLib/.bioio.py.swp deleted ===================================== Binary files a/src/sonLib/.bioio.py.swp and /dev/null differ View it on GitLab: https://salsa.debian.org/med-team/libsonlib/-/compare/9627fa3e78baceab1b7b54085bdab5e846bc2131...2fdf58ac24255692fccd10b4df734b2ee6304528 -- View it on GitLab: https://salsa.debian.org/med-team/libsonlib/-/compare/9627fa3e78baceab1b7b54085bdab5e846bc2131...2fdf58ac24255692fccd10b4df734b2ee6304528 You're receiving this email because of your account on salsa.debian.org.
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