Andreas Tille pushed to branch master at Debian Med / bismark
Commits: 4601499e by Andreas Tille at 2020-06-21T11:38:01+02:00 Provide description - - - - - 1 changed file: - debian/control Changes: ===================================== debian/control ===================================== @@ -1,20 +1,32 @@ Source: bismark -Section: science -Priority: optional Maintainer: Debian Med Packaging Team <[email protected]> Uploaders: Liubov Chuprikova <[email protected]> +Section: science +Priority: optional Build-Depends: debhelper (>= 12~) -Standards-Version: 4.3.0 +Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/bismark Vcs-Git: https://salsa.debian.org/med-team/bismark.git Homepage: https://www.bioinformatics.babraham.ac.uk/projects/bismark/ Package: bismark Architecture: all -Depends: ${shlibs:Depends}, ${misc:Depends}, - perl, +Depends: ${shlibs:Depends}, + ${misc:Depends}, + ${perl:Depends}, samtools, bowtie2, - hisat2 -Description: A bisulfite read mapper and methylation caller - <long_description> + hisat2 +Description: bisulfite read mapper and methylation caller + Bismark is a program to map bisulfite treated sequencing reads to a + genome of interest and perform methylation calls in a single step. The + output can be easily imported into a genome viewer, such as SeqMonk, and + enables a researcher to analyse the methylation levels of their samples + straight away. It's main features are: + . + * Bisulfite mapping and methylation calling in one single step + * Supports single-end and paired-end read alignments + * Supports ungapped and gapped alignments + * Alignment seed length, number of mismatches etc. are adjustable + * Output discriminates between cytosine methylation in CpG, CHG and + CHH context View it on GitLab: https://salsa.debian.org/med-team/bismark/-/commit/4601499e4a3ba29e51e6109aae708ac76fe1e70f -- View it on GitLab: https://salsa.debian.org/med-team/bismark/-/commit/4601499e4a3ba29e51e6109aae708ac76fe1e70f You're receiving this email because of your account on salsa.debian.org.
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