Andreas Tille pushed to branch master at Debian Med / nanolyse
Commits: 4c14c038 by Andreas Tille at 2020-06-24T18:21:42+02:00 Upload to new - - - - - 3b344b20 by Andreas Tille at 2020-06-24T18:26:28+02:00 Add manpage - - - - - 4 changed files: - + debian/NanoLyse.1 - debian/changelog - + debian/createmanpages - + debian/manpages Changes: ===================================== debian/NanoLyse.1 ===================================== @@ -0,0 +1,32 @@ +.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.47.15. +.TH NANOLYSE "1" "June 2020" "NanoLyse 1.1.1" "User Commands" +.SH NAME +NanoLyse \- remove lambda phage reads from a fastq file +.SH SYNOPSIS +.B NanoLyse +[\-h] [\-v] [\-r REFERENCE] [\-\-logfile LOGFILE] +.SH DESCRIPTION +Remove reads mapping to the lambda genome. Reads fastq from stdin and writes to stdout. +.SH OPTIONS +.SS "optional arguments:" +.TP +\fB\-r\fR, \fB\-\-reference\fR REFERENCE +Specify a reference fasta file against which to filter. +.TP +\fB\-\-logfile\fR LOGFILE +Specify the path and filename for the log file. +.SS "General options:" +.TP +\fB\-h\fR, \fB\-\-help\fR +show the help and exit +.TP +\fB\-v\fR, \fB\-\-version\fR +Print version and exit. +.SH "EXAMPLES:" +.IP +gunzip \fB\-c\fR reads.fastq.gz | NanoLyse | gzip > reads_without_lambda.fastq.gz +gunzip \fB\-c\fR reads.fastq.gz | NanoLyse | NanoFilt \fB\-q\fR 12 | gzip > filtered_reads_without_lambda.fastq.gz +gunzip \fB\-c\fR reads.fastq.gz | NanoLyse \fB\-\-reference\fR mygenome.fa.gz | gzip > reads_without_mygenome.fastq.gz +.SH AUTHOR + This manpage was written by Andreas Tille for the Debian distribution and + can be used for any other usage of the program. ===================================== debian/changelog ===================================== @@ -1,5 +1,5 @@ -nanolyse (1.1.1-1) UNRELEASED; urgency=medium +nanolyse (1.1.1-1) unstable; urgency=medium - * Initial release (Closes: #<bug>) + * Initial release (Closes: #963620) - -- Andreas Tille <[email protected]> Fri, 15 May 2020 15:27:17 +0200 + -- Andreas Tille <[email protected]> Wed, 24 Jun 2020 18:21:30 +0200 ===================================== debian/createmanpages ===================================== @@ -0,0 +1,28 @@ +#!/bin/sh +MANDIR=debian +mkdir -p $MANDIR + +VERSION=`dpkg-parsechangelog | awk '/^Version:/ {print $2}' | sed -e 's/^[0-9]*://' -e 's/-.*//' -e 's/[+~]dfsg$//'` +NAME=`grep "^Description:" debian/control | sed 's/^Description: *//' | head -n1` +PROGNAME=`grep "^Package:" debian/control | sed 's/^Package: *//' | head -n1` + +AUTHOR=".SH AUTHOR\n \ +This manpage was written by $DEBFULLNAME for the Debian distribution and\n \ +can be used for any other usage of the program.\ +" + +# If program name is different from package name or title should be +# different from package short description change this here +progname=NanoLyse +help2man --no-info --no-discard-stderr --help-option=" --help" \ + --name="$NAME" \ + --version-string="$VERSION" ${progname} > $MANDIR/${progname}.1 +echo $AUTHOR >> $MANDIR/${progname}.1 + +echo "$MANDIR/*.1" > debian/manpages + +cat <<EOT +Please enhance the help2man output. +The following web page might be helpful in doing so: + http://liw.fi/manpages/ +EOT ===================================== debian/manpages ===================================== @@ -0,0 +1 @@ +debian/*.1 View it on GitLab: https://salsa.debian.org/med-team/nanolyse/-/compare/0c01ca756817f05bf1ce45b4f5c813020fbc0c92...3b344b2076a4ae34d651650e0754f79ffbc0546e -- View it on GitLab: https://salsa.debian.org/med-team/nanolyse/-/compare/0c01ca756817f05bf1ce45b4f5c813020fbc0c92...3b344b2076a4ae34d651650e0754f79ffbc0546e You're receiving this email because of your account on salsa.debian.org.
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