Michael R. Crusoe pushed to branch master at Debian Med / vg
Commits: b048884e by Michael R. Crusoe at 2020-06-25T16:49:55+02:00 forward patches upstream - - - - - 6 changed files: - debian/patches/crossbuild - debian/patches/hardening_flags - debian/patches/parallize_better - debian/patches/python3 - debian/patches/simde - debian/patches/spelling Changes: ===================================== debian/patches/crossbuild ===================================== @@ -1,5 +1,14 @@ From: Michael R. Crusoe <[email protected]> Subject: Enable cross building +Forwarded: https://github.com/benedictpaten/sonLib/pull/41 +Forwarded: https://github.com/yoheirosen/sublinear-Li-Stephens/pull/7 +Forwarded: https://github.com/benedictpaten/sonLib/pull/42 +Forwarded: https://github.com/vgteam/cpp_progress_bar/pull/2 +Forwarded: https://github.com/vgteam/libvgio/pull/24 +Forwarded: https://github.com/vgteam/gfakluge/pull/6 +Forwarded: https://github.com/jltsiren/gbwtgraph/pull/8 +Forwarded: https://github.com/vgteam/DYNAMIC/pull/3 + --- vg.orig/source_me.sh +++ vg/source_me.sh @@ -9,8 +9,8 @@ ===================================== debian/patches/hardening_flags ===================================== @@ -1,5 +1,6 @@ From: Michael R. Crusoe <[email protected]> Subject: Make build system more flexible +Forwarded: https://github.com/vgteam/vg/pull/2864 So that Debian can pass hardening flags --- vg.orig/deps/sdsl-lite/install.sh ===================================== debian/patches/parallize_better ===================================== @@ -1,5 +1,7 @@ From: Michael R. Crusoe <[email protected]> Subject: improve build parallelization +Forwarded: https://github.com/vgteam/structures/pull/10 +Forwarded: https://github.com/benedictpaten/sonLib/pull/40 --- vg.orig/deps/sonLib/externalTools/Makefile +++ vg/deps/sonLib/externalTools/Makefile @@ -8,13 +8,13 @@ ===================================== debian/patches/python3 ===================================== @@ -1,5 +1,8 @@ From: Michael R. Crusoe <[email protected]> Subject: convert all Python scripts to Python v3 +Forwarded: https://github.com/vgteam/vg/pull/2865 +Forwarded: https://github.com/vgteam/gfakluge/pull/7 +Forwarded: https://github.com/benedictpaten/sonLib/pull/43 --- vg.orig/Doxyfile +++ vg/Doxyfile @@ -863,7 +863,7 @@ ===================================== debian/patches/simde ===================================== @@ -1,5 +1,10 @@ Author: Michael R. Crusoe <[email protected]> Description: Increase portability by using SIMD Everywhere library +Forwarded: https://github.com/vgteam/gssw/pull/27 +Forwarded: https://github.com/ocxtal/dozeu/pull/2 +Forwarded: https://github.com/vgteam/libbdsg/pull/72 +Forwarded: https://github.com/vgteam/structures/pull/11 +Forwarded: https://github.com/vgteam/vg/pull/2867 --- vg.orig/deps/dozeu/dozeu.h +++ vg/deps/dozeu/dozeu.h @@ -44,7 +44,8 @@ ===================================== debian/patches/spelling ===================================== @@ -1,5 +1,6 @@ From: Michael R. Crusoe <[email protected]> Subject: fix spelling typos +Forwarded: https://github.com/vgteam/vg/pull/2863 --- vg.orig/src/unittest/aligner.cpp +++ vg/src/unittest/aligner.cpp @@ -149,7 +149,7 @@ View it on GitLab: https://salsa.debian.org/med-team/vg/-/commit/b048884e3843f507c33840d5583d10f0e7532358 -- View it on GitLab: https://salsa.debian.org/med-team/vg/-/commit/b048884e3843f507c33840d5583d10f0e7532358 You're receiving this email because of your account on salsa.debian.org.
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