Nilesh Patra pushed to branch master at Debian Med / seq-gen
Commits: 6b593e40 by Nilesh Patra at 2020-06-25T20:27:35+05:30 Add autopkgtests - - - - - d5d3d7f3 by Nilesh Patra at 2020-06-25T20:28:35+05:30 Drop compat, switch to debhelper-compat 13 - - - - - 60fb5437 by Nilesh Patra at 2020-06-25T20:29:22+05:30 Add "Rules-Requires-Root:no" - - - - - c891ff6d by Nilesh Patra at 2020-06-25T20:31:25+05:30 Update metdata - - - - - e7b976cf by Nilesh Patra at 2020-06-25T20:33:30+05:30 Bump standards version to 4.5.0 - - - - - 5 changed files: - − debian/compat - debian/control - + debian/tests/control - + debian/tests/run-unit-test - debian/upstream/metadata Changes: ===================================== debian/compat deleted ===================================== @@ -1 +0,0 @@ -11 ===================================== debian/control ===================================== @@ -5,11 +5,12 @@ Uploaders: Alexandre Mestiashvili <[email protected]>, Section: non-free/science XS-Autobuild: yes Priority: optional -Build-Depends: debhelper (>= 11~) -Standards-Version: 4.2.1 +Build-Depends: debhelper-compat (= 13) +Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/seq-gen Vcs-Git: https://salsa.debian.org/med-team/seq-gen.git Homepage: http://tree.bio.ed.ac.uk/software/seqgen/ +Rules-Requires-Root: no Package: seq-gen Architecture: any ===================================== debian/tests/control ===================================== @@ -0,0 +1,4 @@ +Tests: run-unit-test +Depends: @ +Restrictions: allow-stderr + ===================================== debian/tests/run-unit-test ===================================== @@ -0,0 +1,27 @@ +#!/bin/bash +set -e + +pkg=seq-gen + +if [ "${AUTOPKGTEST_TMP}" = "" ] ; then + AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX) + trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM +fi + +cp /usr/share/doc/${pkg}/examples/* -a "${AUTOPKGTEST_TMP}" + +cd "${AUTOPKGTEST_TMP}" +gunzip -r * + +echo 'Test 1' +seq-gen -mHKY -t3.0 -f0.3,0.2,0.2,0.3 -l40 -n3 < example.tree > test1.dat + +echo 'Test 2' +seq-gen -mHKY -p5 -n5 -d0.3 < heterogeneity.tree > test2.dat + +echo 'Test 3' +seq-gen -mHKY -g3 -a0.1 < recombinant.tree > test3.dat + +echo 'Test 4' +seq-gen -mHKY -l3 -n5 -z190000 -d0.4 < seqs+trees.phy > test4.dat + ===================================== debian/upstream/metadata ===================================== @@ -21,3 +21,10 @@ Registry: Entry: SCR_014934 - Name: conda:bioconda Entry: seq-gen +--- +Archive: GitHub +Bug-Database: https://github.com/rambaut/Seq-Gen/issues +Bug-Submit: https://github.com/rambaut/Seq-Gen/issues/new +Changelog: https://github.com/rambaut/Seq-Gen/tags +Repository: https://github.com/rambaut/Seq-Gen.git +Repository-Browse: https://github.com/rambaut/Seq-Gen View it on GitLab: https://salsa.debian.org/med-team/seq-gen/-/compare/f21f6f127d23c599ce7a6ed12d10db1c7d6f6358...e7b976cfdb8c800becbc2c4547b453cf4b7c74cd -- View it on GitLab: https://salsa.debian.org/med-team/seq-gen/-/compare/f21f6f127d23c599ce7a6ed12d10db1c7d6f6358...e7b976cfdb8c800becbc2c4547b453cf4b7c74cd You're receiving this email because of your account on salsa.debian.org.
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