Andreas Tille pushed to branch master at Debian Med / pomoxis
Commits: c1c9c7c3 by Andreas Tille at 2020-06-26T16:44:26+02:00 Update Dependencies, missing: https://github.com/shenwei356/seqkit - - - - - 2 changed files: - debian/changelog - debian/control Changes: ===================================== debian/changelog ===================================== @@ -1,6 +1,6 @@ pomoxis (0.3.4-1) UNRELEASED; urgency=medium * Initial release (Closes: #<bug>) - TODO: Dependency python3-mappy build by minimap2 + TODO: Dependency https://github.com/shenwei356/seqkit -- Andreas Tille <[email protected]> Mon, 22 Jun 2020 22:01:48 +0200 ===================================== debian/control ===================================== @@ -6,7 +6,16 @@ Priority: optional Build-Depends: debhelper-compat (= 13), dh-python, python3, - python3-setuptools + python3-setuptools, + python3-virtualenv, + bcftools, + bedtools, + miniasm, + minimap2, + racon, + samtools, +# missing seqkit + tabix Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/pomoxis Vcs-Git: https://salsa.debian.org/med-team/pomoxis.git @@ -15,7 +24,22 @@ Homepage: https://github.com/nanoporetech/pomoxis Package: pomoxis Architecture: all Depends: ${python3:Depends}, - ${misc:Depends} + ${misc:Depends}, + python3-biopython, + python3-intervaltree, + python3-matplotlib, + python3-mappy, + python3-numpy, + python3-pandas, + python3-pysam, + bcftools, + bedtools + miniasm, + minimap2, + porechop, + racon, +# missing seqkit + tabix Description: analysis components from Oxford Nanopore Research Pomoxis comprises a set of basic bioinformatic tools tailored to nanopore sequencing. Notably tools are included for generating and View it on GitLab: https://salsa.debian.org/med-team/pomoxis/-/commit/c1c9c7c3b63c74938c35da8d2f33d7f303edae0b -- View it on GitLab: https://salsa.debian.org/med-team/pomoxis/-/commit/c1c9c7c3b63c74938c35da8d2f33d7f303edae0b You're receiving this email because of your account on salsa.debian.org.
_______________________________________________ debian-med-commit mailing list [email protected] https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
