Andreas Tille pushed to branch master at Debian Med / jaligner
Commits: d7e283e5 by Andreas Tille at 2020-07-03T11:37:15+02:00 Create changelog entries - - - - - 02b3640b by Andreas Tille at 2020-07-03T11:37:51+02:00 routine-update: Standards-Version: 4.5.0 - - - - - f085b1e8 by Andreas Tille at 2020-07-03T11:37:51+02:00 routine-update: debhelper-compat 13 - - - - - f75ac2d7 by Andreas Tille at 2020-07-03T11:37:56+02:00 routine-update: Add salsa-ci file - - - - - 3cb1b7f5 by Andreas Tille at 2020-07-03T11:37:56+02:00 routine-update: Rules-Requires-Root: no - - - - - ed265f6d by Andreas Tille at 2020-07-03T11:38:01+02:00 Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. Changes-By: lintian-brush Fixes: lintian: upstream-metadata-missing-bug-tracking See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html Fixes: lintian: upstream-metadata-missing-repository See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html - - - - - ac791a7e by Andreas Tille at 2020-07-03T11:47:51+02:00 Add patch from pull request fixing traceback of global alignments - - - - - 2988fecb by Andreas Tille at 2020-07-03T11:57:58+02:00 Upload to unstable - - - - - 7 changed files: - debian/changelog - − debian/compat - debian/control - + debian/patches/f267efdf3bc29291eddd380bba127b8ed56f2dc2.patch - + debian/patches/series - + debian/salsa-ci.yml - debian/upstream/metadata Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,26 @@ +jaligner (1.0+dfsg-7) unstable; urgency=medium + + [ Steffen Moeller ] + * d/u/metadata: yamllint + + [ Pranav Ballaney ] + * Install example and reference data + * Install docs + * Add autopkgtests + * Add Pranav Ballaney to Uploaders + * Include reference binary + + [ Andreas Tille ] + * Standards-Version: 4.5.0 (routine-update) + * debhelper-compat 13 (routine-update) + * Add salsa-ci file (routine-update) + * Rules-Requires-Root: no (routine-update) + * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, + Repository-Browse. + * Add patch from pull request fixing traceback of global alignments + + -- Pranav Ballaney <[email protected]> Fri, 03 Jul 2020 11:36:48 +0200 + jaligner (1.0+dfsg-6) unstable; urgency=medium * Team upload. ===================================== debian/compat deleted ===================================== @@ -1 +0,0 @@ -11 ===================================== debian/control ===================================== @@ -5,17 +5,18 @@ Uploaders: Tim Booth <[email protected]>, Pranav Ballaney <[email protected]> Section: science Priority: optional -Build-Depends: debhelper (>= 11~), +Build-Depends: debhelper-compat (= 13), default-jdk Build-Depends-Indep: junit4, javahelper, icedtea-netx, asciidoctor, maven-repo-helper -Standards-Version: 4.2.1 +Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/jaligner Vcs-Git: https://salsa.debian.org/med-team/jaligner.git Homepage: https://github.com/ahmedmoustafa/JAligner +Rules-Requires-Root: no Package: jaligner Architecture: all ===================================== debian/patches/f267efdf3bc29291eddd380bba127b8ed56f2dc2.patch ===================================== @@ -0,0 +1,19 @@ +From f267efdf3bc29291eddd380bba127b8ed56f2dc2 Mon Sep 17 00:00:00 2001 +From: Tobias Bertelsen <[email protected]> +Date: Wed, 25 Feb 2015 16:04:08 +0100 +Subject: [PATCH] Fixing traceback of global alignments + See Pull request: https://github.com/ahmedmoustafa/JAligner/pull/1 +Origin: https://github.com/ahmedmoustafa/JAligner/commit/f267efdf3bc29291eddd380bba127b8ed56f2dc2.patch + + +--- a/src/jaligner/NeedlemanWunschGotoh.java ++++ b/src/jaligner/NeedlemanWunschGotoh.java +@@ -220,7 +220,7 @@ public final class NeedlemanWunschGotoh + } // loop rows + + Cell cell = new Cell(); +- cell.set(maxi, maxj, v[n - 1]); ++ cell.set(m-1, n-1, v[n - 1]); + + logger.info("Finished."); + ===================================== debian/patches/series ===================================== @@ -0,0 +1 @@ +f267efdf3bc29291eddd380bba127b8ed56f2dc2.patch ===================================== debian/salsa-ci.yml ===================================== @@ -0,0 +1,4 @@ +--- +include: + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml ===================================== debian/upstream/metadata ===================================== @@ -1,3 +1,5 @@ +Bug-Database: https://github.com/ahmedmoustafa/JAligner/issues +Bug-Submit: https://github.com/ahmedmoustafa/JAligner/issues/new Registry: - Name: OMICtools Entry: OMICS_20021 @@ -5,3 +7,5 @@ Registry: Entry: NA - Name: SciCrunch Entry: NA +Repository: https://github.com/ahmedmoustafa/JAligner.git +Repository-Browse: https://github.com/ahmedmoustafa/JAligner View it on GitLab: https://salsa.debian.org/med-team/jaligner/-/compare/01a98951682a3f5f013daa2a8723b74f89b1cb45...2988fecb8bf2a2e49742686b87d2c48c07534917 -- View it on GitLab: https://salsa.debian.org/med-team/jaligner/-/compare/01a98951682a3f5f013daa2a8723b74f89b1cb45...2988fecb8bf2a2e49742686b87d2c48c07534917 You're receiving this email because of your account on salsa.debian.org.
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