Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
fbcf7dc6 by Andreas Tille at 2020-07-08T13:43:57+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,14 +1,14 @@
-Last-Update: Wed, 08 Jul 2020 01:42:03 +0000
+Last-Update: Wed, 08 Jul 2020 13:42:03 +0000
Source | Vote | Tasks
| Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 189 | {covid-19,imaging}
|
- orthanc | 96 | {covid-19,imaging,practice}
|
- gdcm | 44 | {imaging-dev}
|
+ dcmtk | 188 | {covid-19,imaging}
|
+ orthanc | 95 | {covid-19,imaging,practice}
|
+ gdcm | 45 | {imaging-dev}
|
orthanc-wsi | 44 |
{his,practice,covid-19,laboratory,imaging,oncology} |
- htsjdk | 30 | {bio-dev}
|
+ htsjdk | 32 | {bio-dev}
|
+ dcm2niix | 24 | {imaging}
|
dicom3tools | 24 | {imaging}
|
- dcm2niix | 23 | {imaging}
|
dicomscope | 23 | {imaging}
|
gnumed-server | 18 | {practice,covid-19}
|
ngs-sdk | 18 | {bio-dev}
|
@@ -20,31 +20,31 @@ Last-Update: Wed, 08 Jul 2020 01:42:03 +0000
jebl2 | 12 | {bio-dev}
|
minc-tools | 12 | {imaging}
|
vtk-dicom | 11 | {imaging}
|
- adun.app | 9 | {bio}
|
biosig4c++ | 9 | {physics,imaging}
|
libdivsufsort | 9 | {bio-dev}
|
+ ngs-sdk | 9 | {bio-dev}
|
openslide | 9 | {imaging}
|
+ adun.app | 8 | {bio}
|
dicompyler | 8 | {oncology}
|
king | 8 | {imaging,typesetting}
|
lagan | 8 | {bio}
|
melting | 8 | {bio,cloud}
|
- ngs-sdk | 8 | {bio-dev}
|
plastimatch | 8 | {imaging}
|
psychopy | 8 | {psychology}
|
libminc | 7 | {imaging-dev}
|
orthanc-webviewer | 7 | {imaging}
|
stacks | 7 | {bio}
|
treeview | 7 | {bio-phylogeny,bio}
|
+ biojava-live | 6 | {bio-dev}
|
ea-utils | 6 | {bio}
|
- king-probe | 6 | {bio}
|
librg-utils-perl | 6 | {bio}
|
orthanc-dicomweb | 6 | {imaging,covid-19}
|
paraclu | 6 | {cloud,bio}
|
anfo | 5 | {bio,cloud}
|
- biojava-live | 5 | {bio-dev}
|
biomaj3-cli | 5 | {cloud}
|
fastlink | 5 | {cloud,bio}
|
getdata | 5 | {bio}
|
+ king-probe | 5 | {bio}
|
mlv-smile | 5 | {bio,cloud}
|
ncbi-seg | 5 | {bio}
|
obitools | 5 | {bio}
|
@@ -57,6 +57,8 @@ Last-Update: Wed, 08 Jul 2020 01:42:03 +0000
biomaj3-daemon | 4 | {bio}
|
elastix | 4 | {imaging}
|
gatb-core | 4 | {bio}
|
+ mauve-aligner | 4 | {bio}
|
+ mhap | 4 | {bio-ngs,bio}
|
mipe | 4 | {cloud,bio}
|
neobio | 4 | {cloud,bio}
|
orthanc-postgresql | 4 | {imaging}
|
@@ -76,6 +78,7 @@ Last-Update: Wed, 08 Jul 2020 01:42:03 +0000
bandage | 3 | {bio}
|
brig | 3 | {bio}
|
busco | 3 | {covid-19,bio}
|
+ daligner | 3 | {bio-ngs,bio}
|
ecopcr | 3 | {bio}
|
edtsurf | 3 | {bio}
|
embassy-domainatrix | 3 | {cloud,bio}
|
@@ -85,8 +88,6 @@ Last-Update: Wed, 08 Jul 2020 01:42:03 +0000
ipig | 3 | {bio}
|
libncl | 3 | {bio}
|
librdp-taxonomy-tree-java | 3 | {bio-dev}
|
- mauve-aligner | 3 | {bio}
|
- mhap | 3 | {bio-ngs,bio}
|
microbegps | 3 | {bio}
|
mrs | 3 | {bio}
|
multiqc | 3 | {bio,covid-19}
|
@@ -111,14 +112,15 @@ Last-Update: Wed, 08 Jul 2020 01:42:03 +0000
beast2-mcmc | 2 | {bio}
|
beast-mcmc | 2 | {bio-phylogeny,bio}
|
bio-rainbow | 2 | {bio}
|
+ biosig4c++ | 2 | {physics,imaging-dev}
|
bio-tradis | 2 | {bio-dev,bio}
|
bitseq | 2 | {bio}
|
+ blasr | 2 | {bio,bio-ngs}
|
blimps | 2 | {bio}
|
canu | 2 | {bio}
|
centrifuge | 2 | {bio,covid-19}
|
clonalframeml | 2 | {bio,covid-19}
|
clonalorigin | 2 | {bio}
|
- daligner | 2 | {bio-ngs,bio}
|
dascrubber | 2 | {bio}
|
dazzdb | 2 | {bio}
|
delly | 2 | {bio,covid-19}
|
@@ -139,8 +141,8 @@ Last-Update: Wed, 08 Jul 2020 01:42:03 +0000
metaphlan2 | 2 | {bio}
|
murasaki | 2 | {bio}
|
ncbi-vdb | 2 | {bio-dev}
|
- oscar | 2 | {practice,tools,data}
|
patman | 2 | {bio}
|
+ pbdagcon | 2 | {bio}
|
phast | 2 | {bio}
|
phybin | 2 | {bio}
|
prime-phylo | 2 | {bio,cloud}
|
@@ -171,7 +173,6 @@ Last-Update: Wed, 08 Jul 2020 01:42:03 +0000
sweed | 2 | {bio}
|
yaha | 2 | {bio}
|
biosig4c++ | 1 | {physics,imaging-dev}
|
- blasr | 1 | {bio,bio-ngs}
|
cat-bat | 1 | {bio,covid-19}
|
ctn | 1 | {imaging-dev}
|
cufflinks | 1 | {cloud,bio}
|
@@ -185,14 +186,15 @@ Last-Update: Wed, 08 Jul 2020 01:42:03 +0000
opencfu | 1 | {laboratory}
|
openslide | 1 | {imaging-dev}
|
opensurgsim | 1 | {imaging-dev}
|
+ oscar | 1 | {practice,tools,data}
|
pbcopper | 1 | {bio-dev}
|
- pbdagcon | 1 | {bio}
|
phipack | 1 | {bio}
|
plasmidseeker | 1 | {bio}
|
python-scitrack | 1 | {covid-19}
|
q2templates | 1 | {bio}
|
rambo-k | 1 | {bio}
|
relion | 1 | {bio}
|
+ stringtie | 1 | {bio,covid-19}
|
thesias | 1 | {bio,covid-19}
|
trace2dbest | 1 | {bio}
|
velvetoptimiser | 1 | {bio}
|
@@ -254,8 +256,8 @@ Last-Update: Wed, 08 Jul 2020 01:42:03 +0000
pilercr | 0 | {bio}
|
python-py2bit | 0 | {bio,bio-dev}
|
quicktree | 0 | {bio,covid-19,bio-phylogeny}
|
- relion | 0 | {bio-dev}
|
relion | 0 | {bio}
|
+ relion | 0 | {bio-dev}
|
sambamba | 0 | {bio}
|
sbmltoolbox | 0 | {bio-dev}
|
seq-gen | 0 | {bio}
|
@@ -265,7 +267,6 @@ Last-Update: Wed, 08 Jul 2020 01:42:03 +0000
smrtanalysis | 0 | {covid-19,bio}
|
spaln | 0 | {bio,covid-19}
|
srf | 0 | {bio-dev}
|
- stringtie | 0 | {bio,covid-19}
|
tophat-recondition | 0 | {bio,covid-19}
|
varna | 0 | {bio}
|
varscan | 0 | {covid-19,bio}
|
@@ -274,5 +275,5 @@ Last-Update: Wed, 08 Jul 2020 01:42:03 +0000
pycoqc | -1 | {covid-19,bio}
|
shovill | -1 | {bio,covid-19}
|
yanagiba | -1 | {bio,covid-19}
|
-(301 rows)
+(302 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab:
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/fbcf7dc6c0bd83258b12ca9758d50d787a184644
--
View it on GitLab:
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/fbcf7dc6c0bd83258b12ca9758d50d787a184644
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