Andreas Tille pushed to branch master at Debian Med / mrbayes
Commits: b97f15d4 by Andreas Tille at 2020-07-18T14:31:34+02:00 Avoid baseline violation by disabling AX_EXT - - - - - 613a233a by Andreas Tille at 2020-07-18T14:31:50+02:00 routine-update: debhelper-compat 13 - - - - - 993bc29b by Andreas Tille at 2020-07-18T14:31:55+02:00 routine-update: Add salsa-ci file - - - - - 0472b78a by Andreas Tille at 2020-07-18T14:31:55+02:00 routine-update: Rules-Requires-Root: no - - - - - 64b119f5 by Andreas Tille at 2020-07-18T14:32:06+02:00 Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. Changes-By: lintian-brush Fixes: lintian: upstream-metadata-missing-bug-tracking See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html Fixes: lintian: upstream-metadata-missing-repository See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html - - - - - 074fbdbe by Andreas Tille at 2020-07-18T14:41:20+02:00 Override dh_missing with --list-missing - - - - - eea344b3 by Andreas Tille at 2020-07-18T14:44:26+02:00 Upload to unstable - - - - - 7 changed files: - debian/changelog - debian/control - + debian/patches/no_baseline_violation.patch - debian/patches/series - debian/rules - + debian/salsa-ci.yml - debian/upstream/metadata Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,17 @@ +mrbayes (3.2.7a-3) unstable; urgency=medium + + * Avoid baseline violation by disabling AX_EXT + Closes: #958125, #964787 + * debhelper-compat 13 (routine-update) + * Add salsa-ci file (routine-update) + * Rules-Requires-Root: no (routine-update) + * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, + Repository-Browse. + * Override dh_missing with --list-missing since due to the duplicate + build some examples would be installed twice otherwise + + -- Andreas Tille <[email protected]> Sat, 18 Jul 2020 14:41:26 +0200 + mrbayes (3.2.7a-2) unstable; urgency=medium * Fix binary-all build ===================================== debian/control ===================================== @@ -4,7 +4,7 @@ Uploaders: Steffen Moeller <[email protected]>, Andreas Tille <[email protected]> Section: science Priority: optional -Build-Depends: debhelper-compat (= 12), +Build-Depends: debhelper-compat (= 13), libreadline-dev, mpi-default-dev, libhmsbeagle-dev, @@ -14,6 +14,7 @@ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/mrbayes Vcs-Git: https://salsa.debian.org/med-team/mrbayes.git Homepage: http://mrbayes.csit.fsu.edu/ +Rules-Requires-Root: no Package: mrbayes Architecture: any ===================================== debian/patches/no_baseline_violation.patch ===================================== @@ -0,0 +1,16 @@ +Description: Avoid baseline violation by disabling AX_EXT +Bug-Debian: https://bugs.debian.org/958125 +Author: Andreas Tille <[email protected]> +Last-Update: Sat, 18 Jul 2020 14:29:31 +0200 + +--- a/configure.ac ++++ b/configure.ac +@@ -241,7 +241,7 @@ AX_CFLAGS_WARN_ALL + + # Check for SIMD (etc.) extensions supported by hardware and compiler + # (-msse2 etc.) +-AX_EXT ++# AX_EXT + + AS_IF([test "x$enable_sse" = "xno"], + [AC_DEFINE([DISABLE_SSE], [1], ===================================== debian/patches/series ===================================== @@ -1,2 +1,3 @@ no_rpath.patch autoreconf.patch +no_baseline_violation.patch ===================================== debian/rules ===================================== @@ -38,3 +38,6 @@ override_dh_installdeb: find debian/.debhelper/mrbayes-mpi/dbgsym-root/usr/lib/debug -name "*.debug" -delete ; \ fi dh_installdeb + +override_dh_missing: + dh_missing --list-missing ===================================== debian/salsa-ci.yml ===================================== @@ -0,0 +1,4 @@ +--- +include: + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml ===================================== debian/upstream/metadata ===================================== @@ -1,3 +1,5 @@ +Bug-Database: https://github.com/NBISweden/MrBayes/issues +Bug-Submit: https://github.com/NBISweden/MrBayes/issues/new Reference: - Author: > Fredrik Ronquist and Maxim Teslenko and Paul van der Mark and @@ -47,3 +49,5 @@ Registry: Entry: OMICS_04237 - Name: conda:bioconda Entry: mrbayes +Repository: https://github.com/NBISweden/MrBayes.git +Repository-Browse: https://github.com/NBISweden/MrBayes View it on GitLab: https://salsa.debian.org/med-team/mrbayes/-/compare/ebc09a0905f2007cff9ff640bc6832c3b3ac14b1...eea344b312147227ec57e07033fb2399bc792e1e -- View it on GitLab: https://salsa.debian.org/med-team/mrbayes/-/compare/ebc09a0905f2007cff9ff640bc6832c3b3ac14b1...eea344b312147227ec57e07033fb2399bc792e1e You're receiving this email because of your account on salsa.debian.org.
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