Nilesh Patra pushed to branch master at Debian Med / mlv-smile
Commits: 5d055f1e by Nilesh Patra at 2020-07-23T20:49:55+05:30 Drop compat, switch to debhelper compat version 13 - - - - - 6be835ca by Nilesh Patra at 2020-07-23T20:57:47+05:30 Fix national encoding - - - - - c2a93343 by Nilesh Patra at 2020-07-23T20:58:24+05:30 Add "Rules-Requires-Root:no" - - - - - 46c74c12 by Nilesh Patra at 2020-07-23T21:00:14+05:30 Fix whitespaces - - - - - b289f700 by Nilesh Patra at 2020-07-23T15:33:36+00:00 Migrate to https in upstream/metadata - - - - - 5e484f01 by Nilesh Patra at 2020-07-23T21:07:27+05:30 Bump standards version to 4.5.0 - - - - - 7 changed files: - debian/changelog - − debian/compat - debian/control - + debian/patches/replace-national-encoding-with-UTF8.patch - debian/patches/series - debian/rules - debian/upstream/metadata Changes: ===================================== debian/changelog ===================================== @@ -53,7 +53,7 @@ mlv-smile (1.47-2) unstable; urgency=low mlv-smile (1.47-1) unstable; urgency=low * initial Release (Closes: #221492). - * renamed package to mlv-smile + * renamed package to mlv-smile * Lintian clean * already prepared patches from Steffen Moeller applied * debian/source/format added @@ -79,4 +79,3 @@ mlv-smile (1.46-1) UNRELEASED; urgency=low * Upstream author contributed man page. -- Steffen Moeller <[email protected]> Tue, 18 Nov 2003 16:20:05 +0100 - ===================================== debian/compat deleted ===================================== @@ -1 +0,0 @@ -11 ===================================== debian/control ===================================== @@ -5,11 +5,12 @@ Uploaders: Steffen Moeller <[email protected]>, Andreas Tille <[email protected]> Section: science Priority: optional -Build-Depends: debhelper (>= 11~) -Standards-Version: 4.2.1 +Build-Depends: debhelper-compat (= 13) +Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/mlv-smile Vcs-Git: https://salsa.debian.org/med-team/mlv-smile.git Homepage: http://www-igm.univ-mlv.fr/~marsan/smile_english.html +Rules-Requires-Root: no Package: mlv-smile Architecture: any ===================================== debian/patches/replace-national-encoding-with-UTF8.patch ===================================== @@ -0,0 +1,12 @@ +Author: Nilesh Patra <[email protected]> +Description: Fix national encoding - use UTF-8 instead. +Last-Updated: July 23, 2020 + +--- a/Lanceur/DocFrancais/param_exemple ++++ b/Lanceur/DocFrancais/param_exemple +@@ -1,4 +1,4 @@ +-## Fichier de parametre commenté ++## Fichier de parametre commenté + + ## Ici on cherche a extraire un modele de la forme XXXXXX___XXXX apparaissant + ## dans au moins 5% des sequences, avec une erreur autorisee dans un des deux ===================================== debian/patches/series ===================================== @@ -3,3 +3,4 @@ although.patch misc.patch mayhem.patch fix-gcc-10.patch +replace-national-encoding-with-UTF8.patch ===================================== debian/rules ===================================== @@ -27,5 +27,4 @@ override_dh_auto_install: sed "s/smile/mlv-smile/g"|\ sed "s/Smile/mlv-smile/g" > mlv-smile.1 dh_installchangelogs READ_ME - dh_auto_install - + dh_auto_install ===================================== debian/upstream/metadata ===================================== @@ -10,7 +10,7 @@ Reference: Pages: 345-362 DOI: 10.1089/106652700750050826 PMID: 11108467 - URL: http://online.liebertpub.com/doi/abs/10.1089/106652700750050826 + URL: https://online.liebertpub.com/doi/abs/10.1089/106652700750050826 eprint: http://online.liebertpub.com/doi/pdfplus/10.1089/106652700750050826 - Author: A. Vanet and L. Marsan and M.-F. Sagot Title: Promoter sequences and algorithmical methods for identifying them @@ -21,7 +21,7 @@ Reference: Pages: 779-799 DOI: 10.1016/S0923-2508(99)00115-1 PMID: 10673015 - URL: http://www.sciencedirect.com/science/article/pii/S0923250899001151 + URL: https://www.sciencedirect.com/science/article/pii/S0923250899001151 - Author: A. Vanet and L. Marsan and A. Labigne and M.-F. Sagot Title: > Inferring regulatory elements from a whole genome. An analysis of @@ -33,7 +33,7 @@ Reference: Pages: 335-353 DOI: 10.1006/jmbi.2000.3576 PMID: 10715205 - URL: http://www.sciencedirect.com/science/article/pii/S0022283600935769 + URL: https://www.sciencedirect.com/science/article/pii/S0022283600935769 - Author: D. Arquès and J.-P. Fallot and L. Marsan and C. Michel Title: An evolutionary analytical model of a complementary circular code Journal: Biosystems View it on GitLab: https://salsa.debian.org/med-team/mlv-smile/-/compare/4ce4a79f5fdfcca95952125d792972e4738ab96e...5e484f01e88b60eb49719fff2c1640be0edb3ca9 -- View it on GitLab: https://salsa.debian.org/med-team/mlv-smile/-/compare/4ce4a79f5fdfcca95952125d792972e4738ab96e...5e484f01e88b60eb49719fff2c1640be0edb3ca9 You're receiving this email because of your account on salsa.debian.org.
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