Andreas Tille pushed to branch master at Debian Med / daligner
Commits: 31637185 by Andreas Tille at 2020-08-15T21:39:52+02:00 o not hard code gcc - - - - - 5a1f9b0e by Andreas Tille at 2020-08-15T21:41:35+02:00 Upload to unstable - - - - - 3 changed files: - debian/changelog - + debian/patches/cross.patch - debian/patches/series Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,11 @@ +daligner (1.0+git20200727.ed40ce5-3) unstable; urgency=medium + + [ Helmut Grohne ] + * Do not hard code gcc + Closes: #968434 + + -- Andreas Tille <[email protected]> Sat, 15 Aug 2020 21:39:59 +0200 + daligner (1.0+git20200727.ed40ce5-2) unstable; urgency=medium * Team upload. ===================================== debian/patches/cross.patch ===================================== @@ -0,0 +1,60 @@ +Date: Sat, 15 Aug 2020 07:24:26 +0200 +From: Helmut Grohne <[email protected]> +Description: Do not hard code gcc +Bug-Debian: https://bugs.debian.org/968434 + +--- a/Makefile ++++ b/Makefile +@@ -10,40 +10,40 @@ ALL = daligner HPC.daligner LAsort LAmer + all: $(ALL) + + daligner: daligner.c filter.c filter.h lsd.sort.c lsd.sort.h align.c align.h DB.c DB.h QV.c QV.h +- gcc $(CFLAGS) -o daligner daligner.c filter.c lsd.sort.c align.c DB.c QV.c -lpthread -lm $(LDFLAGS) ++ $(CC) $(CFLAGS) -o daligner daligner.c filter.c lsd.sort.c align.c DB.c QV.c -lpthread -lm $(LDFLAGS) + + HPC.daligner: HPC.daligner.c DB.c DB.h QV.c QV.h +- gcc $(CFLAGS) -o HPC.daligner HPC.daligner.c DB.c QV.c -lm $(LDFLAGS) ++ $(CC) $(CFLAGS) -o HPC.daligner HPC.daligner.c DB.c QV.c -lm $(LDFLAGS) + + LAsort: LAsort.c align.h DB.c DB.h QV.c QV.h +- gcc $(CFLAGS) -o LAsort LAsort.c DB.c QV.c -lm $(LDFLAGS) ++ $(CC) $(CFLAGS) -o LAsort LAsort.c DB.c QV.c -lm $(LDFLAGS) + + LAmerge: LAmerge.c align.h DB.c DB.h QV.c QV.h +- gcc $(CFLAGS) -o LAmerge LAmerge.c DB.c QV.c -lm $(LDFLAGS) ++ $(CC) $(CFLAGS) -o LAmerge LAmerge.c DB.c QV.c -lm $(LDFLAGS) + + LAshow: LAshow.c align.c align.h DB.c DB.h QV.c QV.h +- gcc $(CFLAGS) -o LAshow LAshow.c align.c DB.c QV.c -lm $(LDFLAGS) ++ $(CC) $(CFLAGS) -o LAshow LAshow.c align.c DB.c QV.c -lm $(LDFLAGS) + + LAdump: LAdump.c align.c align.h DB.c DB.h QV.c QV.h +- gcc $(CFLAGS) -o LAdump LAdump.c align.c DB.c QV.c -lm $(LDFLAGS) ++ $(CC) $(CFLAGS) -o LAdump LAdump.c align.c DB.c QV.c -lm $(LDFLAGS) + + LAcat: LAcat.c align.h DB.c DB.h QV.c QV.h +- gcc $(CFLAGS) -o LAcat LAcat.c DB.c QV.c -lm $(LDFLAGS) ++ $(CC) $(CFLAGS) -o LAcat LAcat.c DB.c QV.c -lm $(LDFLAGS) + + LAsplit: LAsplit.c align.h DB.c DB.h QV.c QV.h +- gcc $(CFLAGS) -o LAsplit LAsplit.c DB.c QV.c -lm $(LDFLAGS) ++ $(CC) $(CFLAGS) -o LAsplit LAsplit.c DB.c QV.c -lm $(LDFLAGS) + + LAcheck: LAcheck.c align.c align.h DB.c DB.h QV.c QV.h +- gcc $(CFLAGS) -o LAcheck LAcheck.c align.c DB.c QV.c -lm $(LDFLAGS) ++ $(CC) $(CFLAGS) -o LAcheck LAcheck.c align.c DB.c QV.c -lm $(LDFLAGS) + + LAa2b: LAa2b.c align.c align.h DB.c DB.h QV.c QV.h +- gcc $(CFLAGS) -o LAa2b LAa2b.c align.c DB.c QV.c -lm $(LDFLAGS) ++ $(CC) $(CFLAGS) -o LAa2b LAa2b.c align.c DB.c QV.c -lm $(LDFLAGS) + + LAb2a: LAb2a.c align.c align.h DB.c DB.h QV.c QV.h +- gcc $(CFLAGS) -o LAb2a LAb2a.c align.c DB.c QV.c -lm $(LDFLAGS) ++ $(CC) $(CFLAGS) -o LAb2a LAb2a.c align.c DB.c QV.c -lm $(LDFLAGS) + + dumpLA: dumpLA.c align.c align.h DB.c DB.h QV.c QV.h +- gcc $(CFLAGS) -o dumpLA dumpLA.c align.c DB.c QV.c -lm $(LDFLAGS) ++ $(CC) $(CFLAGS) -o dumpLA dumpLA.c align.c DB.c QV.c -lm $(LDFLAGS) + + clean: + rm -f $(ALL) ===================================== debian/patches/series ===================================== @@ -1,3 +1,4 @@ cflags.patch lddflags.patch destdir-install.patch +cross.patch View it on GitLab: https://salsa.debian.org/med-team/daligner/-/compare/a2f2a7aa105ef02f929e59577361ecf3f2cc050c...5a1f9b0e404601fd4f63a9835a288007f12df1c2 -- View it on GitLab: https://salsa.debian.org/med-team/daligner/-/compare/a2f2a7aa105ef02f929e59577361ecf3f2cc050c...5a1f9b0e404601fd4f63a9835a288007f12df1c2 You're receiving this email because of your account on salsa.debian.org.
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