Andreas Tille pushed to branch master at Debian Med / lastz
Commits: 282376b4 by Andreas Tille at 2020-10-15T11:09:41+02:00 Fix Build issue on a couple of architectures - - - - - d8ffc056 by Andreas Tille at 2020-10-15T11:29:45+02:00 Fix Build issue on a couple of architectures - - - - - 7316de81 by Andreas Tille at 2020-10-15T11:31:33+02:00 Upload to unstable - - - - - 3 changed files: - debian/changelog - + debian/patches/fix_signed_char.patch - debian/patches/series Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,9 @@ +lastz (1.04.03-3) unstable; urgency=medium + + * Fix Build issue on a couple of architectures + + -- Andreas Tille <[email protected]> Thu, 15 Oct 2020 11:30:04 +0200 + lastz (1.04.03-2) unstable; urgency=medium * Rules-Requires-Root: no (routine-update) ===================================== debian/patches/fix_signed_char.patch ===================================== @@ -0,0 +1,66 @@ +Description: Fix Build issue on a couple of architectures + Comparison with EOF needs to enable signed values +Author: Andreas Tille <[email protected]> +Last-Update: Thu, 15 Oct 2020 11:02:55 +0200 + +--- a/src/sequences.c ++++ b/src/sequences.c +@@ -5086,14 +5086,14 @@ static int find_next_general_fasta_coi + // find the next header + + ch = seq_getc (_seq); +- if (ch == EOF) goto failure; ++ if ((signed char)ch == EOF) goto failure; + + if ((allowComments) && (ch == '#')) + { // comment, skip to end-of-line and go back and try again + while (ch != '\n') + { + ch = seq_getc (_seq); +- if (ch == EOF) goto failure; ++ if ((signed char)ch == EOF) goto failure; + } + continue; + } +@@ -5117,12 +5117,12 @@ static int find_next_general_fasta_coi + leadingWhite = 0; + + ch = seq_getc (_seq); +- if (ch == EOF) goto failure; ++ if ((signed char)ch == EOF) goto failure; + while ((ch != '\n') && (isspace (ch))) + { + leadingWhite++; + ch = seq_getc (_seq); +- if (ch == EOF) goto failure; ++ if ((signed char)ch == EOF) goto failure; + } + + if (ch == '\n') +@@ -5231,7 +5231,7 @@ static int find_next_fastq_coi + debugNamesFile_14; + + ch = seq_getc (_seq); +- if (ch == EOF) goto failure; ++ if ((signed char)ch == EOF) goto failure; + + if (ch != '@') + suicidef ("internal error in find_next_fastq_coi\n" +@@ -5241,7 +5241,7 @@ static int find_next_fastq_coi + // read the header + + ch = seq_getc (_seq); +- if (ch == EOF) goto failure; ++ if ((signed char)ch == EOF) goto failure; + + s = buffer; + while ((ch != '\n') && (ch != '\r')) +@@ -5250,7 +5250,7 @@ static int find_next_fastq_coi + break; // .. truncate the header) + *(s++) = ch; + ch = seq_getc (_seq); +- if (ch == EOF) goto failure; ++ if ((signed char)ch == EOF) goto failure; + } + *s = 0; + ===================================== debian/patches/series ===================================== @@ -1,2 +1,3 @@ propagate_cflags.patch 2to3.patch +fix_signed_char.patch View it on GitLab: https://salsa.debian.org/med-team/lastz/-/compare/62f8b0d4376680e488d5896060e047495460eaed...7316de81a885b021583c0c4819b7194177d8a3ac -- View it on GitLab: https://salsa.debian.org/med-team/lastz/-/compare/62f8b0d4376680e488d5896060e047495460eaed...7316de81a885b021583c0c4819b7194177d8a3ac You're receiving this email because of your account on salsa.debian.org.
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