Andreas Tille pushed to branch master at Debian Med / lastz
Commits: 9b5de7d3 by Andreas Tille at 2020-10-15T13:11:03+02:00 Really fix build issue - - - - - 1838e4f1 by Andreas Tille at 2020-10-15T13:16:46+02:00 Fix spelling - - - - - 55a336e3 by Andreas Tille at 2020-10-15T13:18:24+02:00 Upload to unstable - - - - - 4 changed files: - debian/changelog - debian/patches/fix_signed_char.patch - debian/patches/series - + debian/patches/spelling.patch Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,10 @@ +lastz (1.04.03-4) unstable; urgency=medium + + * Really fix build issue + * Fix spelling + + -- Andreas Tille <[email protected]> Thu, 15 Oct 2020 13:16:55 +0200 + lastz (1.04.03-3) unstable; urgency=medium * Fix Build issue on a couple of architectures ===================================== debian/patches/fix_signed_char.patch ===================================== @@ -37,6 +37,15 @@ Last-Update: Thu, 15 Oct 2020 11:02:55 +0200 } if (ch == '\n') +@@ -5137,7 +5137,7 @@ static int find_next_general_fasta_coi + break; // .. truncate the header) + *(s++) = ch; + ch = seq_getc (_seq); +- if (ch == EOF) goto failure; ++ if ((signed char)ch == EOF) goto failure; + } + *s = 0; + @@ -5231,7 +5231,7 @@ static int find_next_fastq_coi debugNamesFile_14; ===================================== debian/patches/series ===================================== @@ -1,3 +1,4 @@ propagate_cflags.patch 2to3.patch fix_signed_char.patch +spelling.patch ===================================== debian/patches/spelling.patch ===================================== @@ -0,0 +1,35 @@ +Description: Fix spelling +Author: Andreas Tille <[email protected]> +Last-Update: Thu, 15 Oct 2020 11:02:55 +0200 + +--- a/src/dna_utilities.c ++++ b/src/dna_utilities.c +@@ -1147,7 +1147,7 @@ exscoreset* read_score_set + + if ((xss->ss.gapOpenSet) && (xss->ss.gapOpen + xss->ss.gapExtend <= 0)) + suicidef (" (in %s) "scoreFmt " is not a valid gap open penalty with extension penalty " scoreFmt "\n" +- "(open can be negative but the sum has to be postive)\n", ++ "(open can be negative but the sum has to be positive)\n", + name, xss->ss.gapOpen, xss->ss.gapExtend); + if ((xss->ss.gapExtendSet) && (xss->ss.gapExtend < 0)) + suicidef (scoreFmt " is not a valid gap extension penalty (in %s)\n", +--- a/src/lastz.c ++++ b/src/lastz.c +@@ -4870,7 +4870,7 @@ static void format_options (void) + fprintf (helpout, "there may be a question as to whether or not lastz completed successfully. The\n"); + fprintf (helpout, "line \"# lastz end-of-file\" is written to output as the last line. Note that\n"); + fprintf (helpout, "in some formats this is *not* a legal line; the user must remove it before any\n"); +- fprintf (helpout, "downstream processsing.\n"); ++ fprintf (helpout, "downstream processing.\n"); + + exit (EXIT_FAILURE); + } +@@ -8724,7 +8724,7 @@ static void parse_options + + if ((haveGapOpen) && (gapOpen + gapExtend <= 0)) + chastise ("%s is not a valid gap open penalty with extension penalty %s\n" +- "(open can be negative but the sum has to be postive)\n", ++ "(open can be negative but the sum has to be positive)\n", + gapOpenStr, gapExtendStr); + if ((haveGapExtend) && (gapExtend < 0)) + chastise ("%s is not a valid gap extension penalty\n", gapExtendStr); View it on GitLab: https://salsa.debian.org/med-team/lastz/-/compare/7316de81a885b021583c0c4819b7194177d8a3ac...55a336e3d4bac66191649084d117cb71346c5c8b -- View it on GitLab: https://salsa.debian.org/med-team/lastz/-/compare/7316de81a885b021583c0c4819b7194177d8a3ac...55a336e3d4bac66191649084d117cb71346c5c8b You're receiving this email because of your account on salsa.debian.org.
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