Andreas Tille pushed to branch master at Debian Med / soapdenovo
Commits: 1dba3d77 by Andreas Tille at 2020-10-30T20:15:25+01:00 routine-update: Standards-Version: 4.5.0 - - - - - 3ee9c23e by Andreas Tille at 2020-10-30T20:15:25+01:00 routine-update: debhelper-compat 13 - - - - - a19796d1 by Andreas Tille at 2020-10-30T20:15:29+01:00 routine-update: Secure URI in copyright format - - - - - e3d1e6db by Andreas Tille at 2020-10-30T20:15:29+01:00 routine-update: Remove trailing whitespace in debian/changelog - - - - - b2378887 by Andreas Tille at 2020-10-30T20:15:29+01:00 routine-update: Remove trailing whitespace in debian/rules - - - - - 186471a1 by Andreas Tille at 2020-10-30T20:15:30+01:00 routine-update: Add salsa-ci file - - - - - fecd7146 by Andreas Tille at 2020-10-30T20:15:30+01:00 routine-update: Rules-Requires-Root: no - - - - - f22fb749 by Andreas Tille at 2020-10-30T20:20:00+01:00 Remove obsolete field Name from debian/upstream/metadata (already present in machine-readable debian/copyright). Changes-By: lintian-brush - - - - - 4838c025 by Andreas Tille at 2020-10-30T22:52:57+01:00 Use -fcommon option to tolerate "multiple definition of" - - - - - 2016bd76 by Andreas Tille at 2020-10-30T23:01:42+01:00 Upload to unstable - - - - - 8 changed files: - debian/changelog - − debian/compat - debian/control - debian/copyright - debian/patches/add_debug_symbols.patch - debian/rules - + debian/salsa-ci.yml - debian/upstream/metadata Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,19 @@ +soapdenovo (1.05-6) unstable; urgency=medium + + * Team upload. + * Standards-Version: 4.5.0 (routine-update) + * debhelper-compat 13 (routine-update) + * Secure URI in copyright format (routine-update) + * Remove trailing whitespace in debian/changelog (routine-update) + * Remove trailing whitespace in debian/rules (routine-update) + * Add salsa-ci file (routine-update) + * Rules-Requires-Root: no (routine-update) + * Remove obsolete field Name from debian/upstream/metadata (already present in + machine-readable debian/copyright). + * Use -fcommon option to tolerate "multiple definition of" + + -- Andreas Tille <[email protected]> Fri, 30 Oct 2020 22:53:04 +0100 + soapdenovo (1.05-5) unstable; urgency=medium * Team upload @@ -41,7 +57,7 @@ soapdenovo (1.05-3) unstable; urgency=medium soapdenovo (1.05-2) unstable; urgency=low * soapdenovo is not maintained anymore, please use - soapdenovo2 (Closes: #732281). + soapdenovo2 (Closes: #732281). -- Olivier Sallou <[email protected]> Wed, 18 Dec 2013 12:32:59 +0100 ===================================== debian/compat deleted ===================================== @@ -1 +0,0 @@ -11 ===================================== debian/control ===================================== @@ -3,12 +3,13 @@ Maintainer: Debian Med Packaging Team <[email protected]. Uploaders: Olivier Sallou <[email protected]> Section: science Priority: optional -Build-Depends: debhelper (>= 11~), +Build-Depends: debhelper-compat (= 13), rename -Standards-Version: 4.1.4 +Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/soapdenovo Vcs-Git: https://salsa.debian.org/med-team/soapdenovo.git Homepage: http://soap.genomics.org.cn/soapdenovo.html +Rules-Requires-Root: no Package: soapdenovo Architecture: any-amd64 any-ppc64 any-ia64 ===================================== debian/copyright ===================================== @@ -1,4 +1,4 @@ -Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: soapdenovo Source: http://soap.genomics.org.cn/soapdenovo.html ===================================== debian/patches/add_debug_symbols.patch ===================================== @@ -7,8 +7,9 @@ Description: Add debug symbols +++ b/src/127mer/Makefile @@ -1,6 +1,6 @@ CC= gcc - CFLAGS= -O3 -fomit-frame-pointer +-CFLAGS= -O3 -fomit-frame-pointer -DFLAGS= ++CFLAGS+= -O3 -fomit-frame-pointer +DFLAGS= -g OBJS= arc.o attachPEinfo.o bubble.o check.o compactEdge.o \ concatenateEdge.o connect.o contig.o cutTipPreGraph.o cutTip_graph.o \ @@ -17,8 +18,9 @@ Description: Add debug symbols +++ b/src/31mer/Makefile @@ -1,6 +1,6 @@ CC= gcc - CFLAGS= -O3 -fomit-frame-pointer +-CFLAGS= -O3 -fomit-frame-pointer -DFLAGS= ++CFLAGS+= -O3 -fomit-frame-pointer +DFLAGS= -g OBJS= arc.o attachPEinfo.o bubble.o check.o compactEdge.o \ concatenateEdge.o connect.o contig.o cutTipPreGraph.o cutTip_graph.o \ @@ -27,8 +29,9 @@ Description: Add debug symbols +++ b/src/63mer/Makefile @@ -1,6 +1,6 @@ CC= gcc - CFLAGS= -O3 -fomit-frame-pointer +-CFLAGS= -O3 -fomit-frame-pointer -DFLAGS= ++CFLAGS+= -O3 -fomit-frame-pointer +DFLAGS= -g OBJS= arc.o attachPEinfo.o bubble.o check.o compactEdge.o \ concatenateEdge.o connect.o contig.o cutTipPreGraph.o cutTip_graph.o \ ===================================== debian/rules ===================================== @@ -5,9 +5,12 @@ #export DH_VERBOSE=1 export DEB_BUILD_MAINT_OPTIONS = hardening=+all +# FIXME: This is discouraged ... but works for the moment to solve bug #957194 +# https://wiki.gentoo.org/wiki/Gcc_10_porting_notes/fno_common#The_-fcommon_workaround_.28discouraged.29 +export DEB_CFLAGS_MAINT_APPEND=-fcommon %: - dh $@ + dh $@ override_dh_install: dh_install ===================================== debian/salsa-ci.yml ===================================== @@ -0,0 +1,4 @@ +--- +include: + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml ===================================== debian/upstream/metadata ===================================== @@ -1,4 +1,3 @@ -Name: SOAPdenovo Reference: Author: > Ruiqiang Li and Hongmei Zhu and Jue Ruan and Wubin Qian and Xiaodong View it on GitLab: https://salsa.debian.org/med-team/soapdenovo/-/compare/bc6683f5613ae7017c17d458dc6a28a414f4981d...2016bd7682dabf1d07a7eba43eb9146fac47665a -- View it on GitLab: https://salsa.debian.org/med-team/soapdenovo/-/compare/bc6683f5613ae7017c17d458dc6a28a414f4981d...2016bd7682dabf1d07a7eba43eb9146fac47665a You're receiving this email because of your account on salsa.debian.org.
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