Andreas Tille pushed to branch master at Debian Med / bio-eagle
Commits: c3ed4249 by Andreas Tille at 2020-11-06T15:44:34+01:00 Test only on available architectures - - - - - 2e789ecd by Andreas Tille at 2020-11-06T15:44:54+01:00 routine-update: Standards-Version: 4.5.0 - - - - - da0c228b by Andreas Tille at 2020-11-06T15:44:54+01:00 routine-update: debhelper-compat 13 - - - - - f5b9d106 by Andreas Tille at 2020-11-06T15:44:59+01:00 routine-update: Add salsa-ci file - - - - - 83621ba0 by Andreas Tille at 2020-11-06T15:45:00+01:00 routine-update: Rules-Requires-Root: no - - - - - c56140e9 by Andreas Tille at 2020-11-06T15:45:10+01:00 Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. Changes-By: lintian-brush Fixes: lintian: upstream-metadata-missing-bug-tracking See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html Fixes: lintian: upstream-metadata-missing-repository See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html - - - - - b2d49c05 by Andreas Tille at 2020-11-06T15:45:10+01:00 Remove obsolete fields Contact, Name from debian/upstream/metadata (already present in machine-readable debian/copyright). Changes-By: lintian-brush - - - - - c5d5fa3d by Andreas Tille at 2020-11-06T15:45:10+01:00 Replace use of deprecated $ADTTMP with $AUTOPKGTEST_TMP. Changes-By: lintian-brush Fixes: lintian: uses-deprecated-adttmp See-also: https://lintian.debian.org/tags/uses-deprecated-adttmp.html - - - - - 4ab62ed3 by Andreas Tille at 2020-11-06T15:47:51+01:00 Cleanup changelog - - - - - c7c6ae86 by Andreas Tille at 2020-11-06T15:52:46+01:00 Upload to unstable - - - - - 6 changed files: - debian/changelog - debian/control - + debian/salsa-ci.yml - debian/tests/control - debian/tests/run-sample-analysis - debian/upstream/metadata Changes: ===================================== debian/changelog ===================================== @@ -1,10 +1,18 @@ -bio-eagle (2.4.1-2) UNRELEASED; urgency=medium +bio-eagle (2.4.1-2) unstable; urgency=medium * Team upload. - * debhelper-compat 12 - * Standards-Version: 4.4.1 (no changes needed). - - -- Michael R. Crusoe <[email protected]> Tue, 17 Dec 2019 15:30:05 +0100 + * Test only on available architectures + * Standards-Version: 4.5.0 (routine-update) + * debhelper-compat 13 (routine-update) + * Add salsa-ci file (routine-update) + * Rules-Requires-Root: no (routine-update) + * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, + Repository-Browse. + * Remove obsolete fields Contact, Name from debian/upstream/metadata (already + present in machine-readable debian/copyright). + * Replace use of deprecated $ADTTMP with $AUTOPKGTEST_TMP. + + -- Andreas Tille <[email protected]> Fri, 06 Nov 2020 15:48:02 +0100 bio-eagle (2.4.1-1) unstable; urgency=medium ===================================== debian/control ===================================== @@ -3,17 +3,18 @@ Maintainer: Debian Med Packaging Team <[email protected]. Uploaders: Dylan Aïssi <[email protected]> Section: science Priority: optional -Build-Depends: debhelper-compat (= 12), +Build-Depends: debhelper-compat (= 13), libopenblas-dev, libboost-dev, libboost-iostreams-dev, libboost-program-options-dev, libhts-dev (>= 1.4), zlib1g-dev -Standards-Version: 4.4.1 +Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/bio-eagle Vcs-Git: https://salsa.debian.org/med-team/bio-eagle.git Homepage: https://data.broadinstitute.org/alkesgroup/Eagle/ +Rules-Requires-Root: no Package: bio-eagle Architecture: any-amd64 any-i386 ===================================== debian/salsa-ci.yml ===================================== @@ -0,0 +1,4 @@ +--- +include: + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml ===================================== debian/tests/control ===================================== @@ -1,2 +1,3 @@ Tests: run-sample-analysis Depends: @ +Architecture: any-amd64 any-i386 ===================================== debian/tests/run-sample-analysis ===================================== @@ -5,11 +5,11 @@ # Last-Update: 2016-10-30 pkg=bio-eagle -if [ "$ADTTMP" = "" ] ; then - ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX` +if [ "$AUTOPKGTEST_TMP" = "" ] ; then + AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX` fi -cd $ADTTMP -cp -a /usr/share/doc/${pkg}/examples/* $ADTTMP +cd $AUTOPKGTEST_TMP +cp -a /usr/share/doc/${pkg}/examples/* $AUTOPKGTEST_TMP gunzip EUR_test.bed.gz gunzip EUR_test.bim.gz @@ -41,5 +41,5 @@ bio-eagle \ --numThreads=4 \ --v1fast -rm -rf $ADTTMP/* +rm -rf $AUTOPKGTEST_TMP/* ===================================== debian/upstream/metadata ===================================== @@ -1,5 +1,5 @@ -Contact: Po-Ru Loh <loh at hsph.harvard.edu> -Name: eagle +Bug-Database: https://github.com/poruloh/Eagle/issues +Bug-Submit: https://github.com/poruloh/Eagle/issues/new Reference: - Author: Po-Ru Loh and Pier Francesco Palamara and Alkes L Price Title: Fast and accurate long-range phasing in a UK Biobank cohort @@ -25,3 +25,5 @@ Registry: Entry: NA - Name: SciCrunch Entry: NA +Repository: https://github.com/poruloh/Eagle.git +Repository-Browse: https://github.com/poruloh/Eagle View it on GitLab: https://salsa.debian.org/med-team/bio-eagle/-/compare/d119598987524dd4dd2c5c85da67b180915707ed...c7c6ae867b86fb82e78260fcecb73ade9b3ed594 -- View it on GitLab: https://salsa.debian.org/med-team/bio-eagle/-/compare/d119598987524dd4dd2c5c85da67b180915707ed...c7c6ae867b86fb82e78260fcecb73ade9b3ed594 You're receiving this email because of your account on salsa.debian.org.
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