Andreas Tille pushed to branch master at Debian Med / barrnap
Commits: bfe2675d by Andreas Tille at 2020-11-06T15:33:22+01:00 Restrict test architectures to those where hmmer is available since the package Depends: hmmer - - - - - cdf5c306 by Andreas Tille at 2020-11-06T15:33:36+01:00 routine-update: debhelper-compat 13 - - - - - 14b9c5b4 by Andreas Tille at 2020-11-06T15:33:39+01:00 routine-update: Drop useless get-orig-source target - - - - - 95cc4d9a by Andreas Tille at 2020-11-06T15:46:28+01:00 routine-update: Do not parse d/changelog - - - - - 201af7ba by Andreas Tille at 2020-11-06T15:46:28+01:00 routine-update: Add salsa-ci file - - - - - 2e9ec4a2 by Andreas Tille at 2020-11-06T15:46:28+01:00 routine-update: Rules-Requires-Root: no - - - - - daf8eb1a by Andreas Tille at 2020-11-06T15:46:33+01:00 Set upstream metadata fields: Repository, Repository-Browse. Changes-By: lintian-brush Fixes: lintian: upstream-metadata-missing-repository See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html - - - - - 372e23a0 by Andreas Tille at 2020-11-06T16:29:02+01:00 routine-update: Do not parse d/changelog - - - - - 8fff53b1 by Andreas Tille at 2020-11-06T16:29:03+01:00 Remove duplicate line from changelog. Changes-By: lintian-brush - - - - - 2fae6bff by Andreas Tille at 2020-11-06T16:37:18+01:00 Deactivate complex and error-prone dh_auto_clean override - - - - - 841b032d by Andreas Tille at 2020-11-06T16:48:02+01:00 Remove invalid lintian-override - - - - - bcbe6782 by Andreas Tille at 2020-11-06T16:49:28+01:00 Upload to unstable - - - - - 7 changed files: - debian/changelog - debian/control - − debian/lintian-overrides - debian/rules - + debian/salsa-ci.yml - debian/tests/control - debian/upstream/metadata Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,19 @@ +barrnap (0.9+dfsg-3) unstable; urgency=medium + + * Team upload. + * Restrict test architectures to those where hmmer is available + since the package Depends: hmmer + * debhelper-compat 13 (routine-update) + * Drop useless get-orig-source target (routine-update) + * Do not parse d/changelog (routine-update) + * Add salsa-ci file (routine-update) + * Rules-Requires-Root: no (routine-update) + * Set upstream metadata fields: Repository, Repository-Browse. + * Deactivate complex and error-prone dh_auto_clean override + * Remove invalid lintian-override + + -- Andreas Tille <[email protected]> Fri, 06 Nov 2020 16:48:17 +0100 + barrnap (0.9+dfsg-2) unstable; urgency=medium * Add references to conda (Thanks Steffen Moeller). ===================================== debian/control ===================================== @@ -1,20 +1,25 @@ Source: barrnap -Priority: optional -Section: science Maintainer: Debian Med Packaging Team <[email protected]> Uploaders: Sascha Steinbiss <[email protected]> -Build-Depends: debhelper-compat (= 12), - hmmer (>= 3.1), +Section: science +Priority: optional +Build-Depends: debhelper-compat (= 13), + hmmer, lua5.1, bedtools Standards-Version: 4.5.0 -Homepage: http://www.vicbioinformatics.com/software.barrnap.shtml Vcs-Browser: https://salsa.debian.org/med-team/barrnap Vcs-Git: https://salsa.debian.org/med-team/barrnap.git +Homepage: http://www.vicbioinformatics.com/software.barrnap.shtml +Rules-Requires-Root: no Package: barrnap Architecture: all -Depends: ${perl:Depends}, ${shlibs:Depends}, ${misc:Depends}, hmmer (>= 3.1), bedtools +Depends: ${perl:Depends}, + ${shlibs:Depends}, + ${misc:Depends}, + hmmer, + bedtools Description: rapid ribosomal RNA prediction Barrnap (BAsic Rapid Ribosomal RNA Predictor) predicts the location of ribosomal RNA genes in genomes. It supports bacteria (5S,23S,16S), archaea ===================================== debian/lintian-overrides deleted ===================================== @@ -1,2 +0,0 @@ -# Upstream does not provide a changelog. -barrnap: no-upstream-changelog ===================================== debian/rules ===================================== @@ -2,9 +2,9 @@ # -*- makefile -*- DH_VERBOSE=1 -DEBVERS := $(shell dpkg-parsechangelog | sed -n -e 's/^Version: //p') -VERSION := $(shell echo '$(DEBVERS)' | sed -e 's/^[[:digit:]]*://' -e 's/[~-].*//') -OVERSION := $(shell echo '$(DEBVERS)' | sed -e 's/^[[:digit:]]*://' -e 's/[+].*//') +include /usr/share/dpkg/default.mk +VERSION := $(shell echo '$(DEB_VERSION)' | sed -e 's/^[[:digit:]]*://' -e 's/[~-].*//') +OVERSION := $(shell echo '$(DEB_VERSION)' | sed -e 's/^[[:digit:]]*://' -e 's/[+].*//') %: dh $@ @@ -15,11 +15,9 @@ override_dh_auto_build: override_dh_auto_install: # pass -override_dh_auto_clean: +FIXME_override_dh_auto_clean: # This does not work :-( rm -rf db/free -get-orig-source: - uscan --verbose --force-download --repack --compression xz --destdir=.. unxz ../barrnap_$(OVERSION).orig.tar.xz mkdir -p debian/repack-tmp tar xf ../barrnap_$(OVERSION).orig.tar -C debian/repack-tmp ===================================== debian/salsa-ci.yml ===================================== @@ -0,0 +1,4 @@ +--- +include: + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml ===================================== debian/tests/control ===================================== @@ -1,3 +1,5 @@ Tests: test-example Depends: @ Restrictions: allow-stderr +# Depends hmmer, which is available on the following architectures +Architecture: any-amd64 any-i386 powerpc ppc64 x32 ===================================== debian/upstream/metadata ===================================== @@ -1,6 +1,6 @@ Bug-Database: https://github.com/tseemann/barrnap/issues Bug-Submit: https://github.com/tseemann/barrnap/issues/new -Repository: https://github.com/tseemann/barrnap +Repository: https://github.com/tseemann/barrnap.git Registry: - Name: SciCrunch Entry: SCR_015995 @@ -10,3 +10,4 @@ Registry: Entry: OMICS_13988 - Name: conda:bioconda Entry: barrnap +Repository-Browse: https://github.com/tseemann/barrnap View it on GitLab: https://salsa.debian.org/med-team/barrnap/-/compare/4e70e099dee804a03e45b5cbc4013b58db692470...bcbe6782e9afedf509018aad74f676670671f587 -- View it on GitLab: https://salsa.debian.org/med-team/barrnap/-/compare/4e70e099dee804a03e45b5cbc4013b58db692470...bcbe6782e9afedf509018aad74f676670671f587 You're receiving this email because of your account on salsa.debian.org.
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