Andreas Tille pushed to branch master at Debian Med / profbval
Commits: 59f1ecf6 by Andreas Tille at 2020-11-26T08:04:44+01:00 routine-update: Standards-Version: 4.5.1 - - - - - 51801d40 by Andreas Tille at 2020-11-26T08:04:45+01:00 routine-update: debhelper-compat 13 - - - - - 537d43c1 by Andreas Tille at 2020-11-26T08:04:53+01:00 routine-update: Remove trailing whitespace in debian/changelog - - - - - 9b259418 by Andreas Tille at 2020-11-26T08:04:53+01:00 routine-update: Remove trailing whitespace in debian/control - - - - - 77cb52d4 by Andreas Tille at 2020-11-26T08:04:53+01:00 routine-update: Add salsa-ci file - - - - - 9752d147 by Andreas Tille at 2020-11-26T08:04:53+01:00 routine-update: Rules-Requires-Root: no - - - - - ad2f1266 by Andreas Tille at 2020-11-26T08:05:02+01:00 Set upstream metadata fields: Bug-Submit (from ./configure). Changes-By: lintian-brush - - - - - dbfcbc99 by Andreas Tille at 2020-11-26T08:05:02+01:00 Remove obsolete field Name from debian/upstream/metadata (already present in machine-readable debian/copyright). Changes-By: lintian-brush - - - - - 1671855b by Andreas Tille at 2020-11-26T08:05:03+01:00 Replace use of deprecated $ADTTMP with $AUTOPKGTEST_TMP. Changes-By: lintian-brush Fixes: lintian: uses-deprecated-adttmp See-also: https://lintian.debian.org/tags/uses-deprecated-adttmp.html - - - - - d70f93fd by Andreas Tille at 2020-11-26T08:05:03+01:00 routine-update: watch file standard 4 - - - - - 7e6a9333 by Andreas Tille at 2020-11-26T08:08:52+01:00 routine-update: Ready to upload to unstable - - - - - 7 changed files: - debian/changelog - − debian/compat - debian/control - + debian/salsa-ci.yml - debian/tests/installation-test - debian/upstream/metadata - debian/watch Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,19 @@ +profbval (1.0.22-7) unstable; urgency=medium + + * Standards-Version: 4.5.1 (routine-update) + * debhelper-compat 13 (routine-update) + * Remove trailing whitespace in debian/changelog (routine-update) + * Remove trailing whitespace in debian/control (routine-update) + * Add salsa-ci file (routine-update) + * Rules-Requires-Root: no (routine-update) + * Set upstream metadata fields: Bug-Submit (from ./configure). + * Remove obsolete field Name from debian/upstream/metadata (already present in + machine-readable debian/copyright). + * Replace use of deprecated $ADTTMP with $AUTOPKGTEST_TMP. + * watch file standard 4 (routine-update) + + -- Andreas Tille <[email protected]> Thu, 26 Nov 2020 08:05:03 +0100 + profbval (1.0.22-6) unstable; urgency=medium * pp-popularity-contest only suggested @@ -18,7 +34,7 @@ profbval (1.0.22-5) unstable; urgency=medium profbval (1.0.22-4) unstable; urgency=medium * Team upload. - * added allow-stderr restriction to debian/tests/control - in case when + * added allow-stderr restriction to debian/tests/control - in case when recommended package `pp-popularity-contest` is not installed, and described that in debian/README.test * add hardening @@ -28,7 +44,7 @@ profbval (1.0.22-4) unstable; urgency=medium profbval (1.0.22-3) unstable; urgency=medium * Team upload. - * changed citation in debian/upstream/metadata from search string to + * changed citation in debian/upstream/metadata from search string to corresponding PMID article link * add simple testsuite * cme fix dpkg-control ===================================== debian/compat deleted ===================================== @@ -1 +0,0 @@ -11 ===================================== debian/control ===================================== @@ -5,12 +5,13 @@ Uploaders: Laszlo Kajan <[email protected]>, Andreas Tille <[email protected]> Section: science Priority: optional -Build-Depends: debhelper (>= 11~), +Build-Depends: debhelper-compat (= 13), perl -Standards-Version: 4.2.1 +Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/profbval Vcs-Git: https://salsa.debian.org/med-team/profbval.git Homepage: https://www.rostlab.org/owiki/index.php/PROFbval +Rules-Requires-Root: no Package: profbval Architecture: all @@ -22,11 +23,11 @@ Recommends: blast2, profphd Suggests: pp-popularity-contest Description: predictor of flexible/rigid protein residues from sequence - PROFbval can be useful for both protein structure and - function predictions. For instance, a biologist can locate potentially - antigenic determinants by identifying the most flexible residues on the - protein surface. Additionally, a crystallographer can locate residues that - potentially have high experimental B-values. + PROFbval can be useful for both protein structure and + function predictions. For instance, a biologist can locate potentially + antigenic determinants by identifying the most flexible residues on the + protein surface. Additionally, a crystallographer can locate residues that + potentially have high experimental B-values. . PROFbval takes the following input, further described on profbval(1): * a protein sequence in a FASTA file @@ -35,8 +36,8 @@ Description: predictor of flexible/rigid protein residues from sequence . Background: the mobility of a given residue on the protein surface is related to its functional role. - Therefore, identification of extremely rigid or flexible - residues on the protein surface is helpful for identifying functionally - important residues in proteins. A common measure of atom mobility in proteins + Therefore, identification of extremely rigid or flexible + residues on the protein surface is helpful for identifying functionally + important residues in proteins. A common measure of atom mobility in proteins is B-value data from x-ray crystallography structures. PROFbval is the first tool to predict normalized backbone B-values from amino-acid sequence. ===================================== debian/salsa-ci.yml ===================================== @@ -0,0 +1,4 @@ +--- +include: + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml ===================================== debian/tests/installation-test ===================================== @@ -6,12 +6,12 @@ set -e pkg=profbval -if [ "$ADTTMP" = "" ] ; then - ADTTMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX) - trap "rm -rf $ADTTMP" 0 INT QUIT ABRT PIPE TERM +if [ "$AUTOPKGTEST_TMP" = "" ] ; then + AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX) + trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM fi -cd $ADTTMP +cd $AUTOPKGTEST_TMP cp -a /usr/share/doc/${pkg}/examples/* . find . -type f -name "*.gz" -exec gunzip \{\} \; ===================================== debian/upstream/metadata ===================================== @@ -1,4 +1,4 @@ -Name: profbval +Bug-Submit: https://rostlab.org/cgi-bin/bugzilla3/enter_bug.cgi?product=profbval Reference: - Author: Avner Schlessinger and Guy Yachdav and Burkhard Rost Title: > ===================================== debian/watch ===================================== @@ -1,2 +1,2 @@ -version=3 +version=4 opts=pasv ftp://rostlab.org/profbval/profbval-([0-9.]+)\.tar\.gz View it on GitLab: https://salsa.debian.org/med-team/profbval/-/compare/8797fd8a6e5b86dbe56901fc6b26cefb83cb638c...7e6a9333aa4652a1330dd48cd607d3fdac80ae9a -- View it on GitLab: https://salsa.debian.org/med-team/profbval/-/compare/8797fd8a6e5b86dbe56901fc6b26cefb83cb638c...7e6a9333aa4652a1330dd48cd607d3fdac80ae9a You're receiving this email because of your account on salsa.debian.org.
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