Andreas Tille pushed to branch master at Debian Med / mothur
Commits: c14c3dde by Andreas Tille at 2020-12-04T21:52:18+01:00 Do not include sys/sysctl.h since it will be removed and is not used anyway - - - - - e4fff2b7 by Andreas Tille at 2020-12-04T21:52:49+01:00 routine-update: Standards-Version: 4.5.1 - - - - - 4da324a9 by Andreas Tille at 2020-12-04T21:53:03+01:00 Set upstream metadata fields: Repository, Repository-Browse. Changes-By: lintian-brush Fixes: lintian: upstream-metadata-missing-repository See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html - - - - - 5 changed files: - debian/changelog - debian/control - + debian/patches/drop_sys_sysctl.h.patch - debian/patches/series - debian/upstream/metadata Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,13 @@ +mothur (1.44.3-2) UNRELEASED; urgency=medium + + * Do not include sys/sysctl.h since it will be removed and is + not used anyway + Closes: #967985 + * Standards-Version: 4.5.1 (routine-update) + * Set upstream metadata fields: Repository, Repository-Browse. + + -- Andreas Tille <[email protected]> Fri, 04 Dec 2020 21:50:02 +0100 + mothur (1.44.3-1) unstable; urgency=medium * New upstream version 1.44.3 ===================================== debian/control ===================================== @@ -10,7 +10,7 @@ Build-Depends: debhelper-compat (= 13), libboost-iostreams-dev, libreadline-dev, zlib1g-dev -Standards-Version: 4.5.0 +Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/mothur Vcs-Git: https://salsa.debian.org/med-team/mothur.git Homepage: https://www.mothur.org ===================================== debian/patches/drop_sys_sysctl.h.patch ===================================== @@ -0,0 +1,35 @@ +Description: Do not include sys/sysctl.h since it will be removed and is not used anyway +Bug-Debia: https://bugs.debian.org/967985 +Author: Andreas Tille <[email protected]> +Last-Update: Fri, 04 Dec 2020 21:50:02 +0100 + +--- a/source/uchime_src/myutils.cpp ++++ b/source/uchime_src/myutils.cpp +@@ -672,7 +672,6 @@ double GetMemUseBytes() + #include <stdio.h> + #include <unistd.h> + #include <sys/types.h> +-#include <sys/sysctl.h> + #include <sys/socket.h> + #include <sys/gmon.h> + #include <mach/vm_param.h> +--- a/source/mothur.h ++++ b/source/mothur.h +@@ -83,7 +83,6 @@ + #include <sys/resource.h> + #include <sys/types.h> + #include <sys/stat.h> +- #include <sys/sysctl.h> + #include <unistd.h> + + +--- a/TestMothur/catch.hpp ++++ b/TestMothur/catch.hpp +@@ -7992,7 +7992,6 @@ namespace Catch { + #include <stdbool.h> + #include <sys/types.h> + #include <unistd.h> +- #include <sys/sysctl.h> + + namespace Catch{ + ===================================== debian/patches/series ===================================== @@ -1 +1,2 @@ 0002-Fix-include.patch +drop_sys_sysctl.h.patch ===================================== debian/upstream/metadata ===================================== @@ -29,3 +29,5 @@ Registry: Entry: SCR_011947 - Name: conda:bioconda Entry: mothur +Repository: https://github.com/mothur/mothur.git +Repository-Browse: https://github.com/mothur/mothur View it on GitLab: https://salsa.debian.org/med-team/mothur/-/compare/3ff22c70507d77141dd280ce73f22c38a3c9e3e3...4da324a9feefb4100e0ac9e48461dd7de3d4253d -- View it on GitLab: https://salsa.debian.org/med-team/mothur/-/compare/3ff22c70507d77141dd280ce73f22c38a3c9e3e3...4da324a9feefb4100e0ac9e48461dd7de3d4253d You're receiving this email because of your account on salsa.debian.org.
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