Andreas Tille pushed to branch master at Debian Med / librostlab-blast
Commits: 1df7072a by Andreas Tille at 2020-12-04T23:19:53+01:00 routine-update: Standards-Version: 4.5.1 - - - - - 8cf5bc27 by Andreas Tille at 2020-12-04T23:19:53+01:00 routine-update: debhelper-compat 13 - - - - - 63ac2236 by Andreas Tille at 2020-12-04T23:20:03+01:00 routine-update: Secure URI in copyright format - - - - - 084e7200 by Andreas Tille at 2020-12-04T23:20:03+01:00 routine-update: Remove trailing whitespace in debian/changelog - - - - - d78c1b96 by Andreas Tille at 2020-12-04T23:20:03+01:00 routine-update: Remove trailing whitespace in debian/copyright - - - - - f0976827 by Andreas Tille at 2020-12-04T23:20:03+01:00 routine-update: Add salsa-ci file - - - - - 40be610c by Andreas Tille at 2020-12-04T23:20:03+01:00 routine-update: Rules-Requires-Root: no - - - - - 83643253 by Andreas Tille at 2020-12-04T23:20:05+01:00 Use secure URI in Homepage field. Changes-By: lintian-brush Fixes: lintian: homepage-field-uses-insecure-uri See-also: https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html - - - - - f56c37c2 by Andreas Tille at 2020-12-04T23:20:07+01:00 Set upstream metadata fields: Bug-Submit (from ./configure). Changes-By: lintian-brush Fixes: lintian: upstream-metadata-file-is-missing See-also: https://lintian.debian.org/tags/upstream-metadata-file-is-missing.html - - - - - 20e58b93 by Andreas Tille at 2020-12-04T23:20:07+01:00 Replace use of deprecated $ADTTMP with $AUTOPKGTEST_TMP. Changes-By: lintian-brush Fixes: lintian: uses-deprecated-adttmp See-also: https://lintian.debian.org/tags/uses-deprecated-adttmp.html - - - - - b094d635 by Andreas Tille at 2020-12-04T23:29:14+01:00 dh_missing --fail-missing friendly installation - - - - - ba910fcf by Andreas Tille at 2020-12-04T23:35:31+01:00 Add autopkgtest error as TODO - - - - - 9 changed files: - debian/changelog - − debian/compat - debian/control - debian/copyright - debian/librostlab-blast0-dev.examples - debian/rules - + debian/salsa-ci.yml - debian/tests/installation-test - + debian/upstream/metadata Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,37 @@ +librostlab-blast (1.0.1-11) UNRELEASED; urgency=medium + + * Standards-Version: 4.5.1 (routine-update) + * debhelper-compat 13 (routine-update) + * Secure URI in copyright format (routine-update) + * Remove trailing whitespace in debian/changelog (routine-update) + * Remove trailing whitespace in debian/copyright (routine-update) + * Add salsa-ci file (routine-update) + * Rules-Requires-Root: no (routine-update) + * Use secure URI in Homepage field. + * Set upstream metadata fields: Bug-Submit (from ./configure). + * Replace use of deprecated $ADTTMP with $AUTOPKGTEST_TMP. + * dh_missing --fail-missing friendly installation + TODO: +autopkgtest [22:31:34]: test installation-test: [----------------------- +Compile and run... +In file included from parseblast.cpp:2: +/usr/include/rostlab/blast-parser-driver.h:61:12: error: ‘enum rostlab::blast::parser::token::token_kind_type’ is not a class or namespace + 61 | friend YY_DECL_FRIEND; + | ^~~~~~~~~~~~~~ +autopkgtest [22:31:35]: test installation-test: -----------------------] +autopkgtest [22:31:35]: test installation-test: - - - - - - - - - - results - - - - - - - - - - +installation-test FAIL non-zero exit status 1 +autopkgtest [22:31:35]: test installation-test: - - - - - - - - - - stderr - - - - - - - - - - +In file included from parseblast.cpp:2: +/usr/include/rostlab/blast-parser-driver.h:61:12: error: ‘enum rostlab::blast::parser::token::token_kind_type’ is not a class or namespace + 61 | friend YY_DECL_FRIEND; + | ^~~~~~~~~~~~~~ +autopkgtest [22:31:35]: @@@@@@@@@@@@@@@@@@@@ summary +installation-test FAIL non-zero exit status 1 + + + -- Andreas Tille <[email protected]> Fri, 04 Dec 2020 23:19:53 +0100 + librostlab-blast (1.0.1-10) unstable; urgency=medium * Do not render PDF documentation any more since its not really important @@ -108,7 +142,7 @@ librostlab-blast (1.0.0-3) unstable; urgency=low librostlab-blast (1.0.0-2) unstable; urgency=low - * Added missing librostlab3-dev dependency to librostlab-blast0-dev. + * Added missing librostlab3-dev dependency to librostlab-blast0-dev. * Mention libzerg in package description. -- Laszlo Kajan <[email protected]> Wed, 04 Apr 2012 10:57:21 +0200 ===================================== debian/compat deleted ===================================== @@ -1 +0,0 @@ -11 ===================================== debian/control ===================================== @@ -4,7 +4,7 @@ Uploaders: Laszlo Kajan <[email protected]>, Andreas Tille <[email protected]> Section: science Priority: optional -Build-Depends: debhelper (>= 11~), +Build-Depends: debhelper-compat (= 13), d-shlibs, bison, doxygen, @@ -14,10 +14,11 @@ Build-Depends: debhelper (>= 11~), librostlab-dev, texlive-fonts-recommended, texlive-latex-extra -Standards-Version: 4.3.0 +Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/librostlab-blast Vcs-Git: https://salsa.debian.org/med-team/librostlab-blast.git -Homepage: http://rostlab.org/ +Homepage: https://rostlab.org/ +Rules-Requires-Root: no Package: librostlab-blast0v5 Architecture: any ===================================== debian/copyright ===================================== @@ -1,4 +1,4 @@ -Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: librostlab-blast Upstream-Contact: Laszlo Kajan <[email protected]> Source: http://rostlab.org/ @@ -16,12 +16,12 @@ License: GPL-3+ it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - . + . This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. - . + . You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>. . @@ -33,12 +33,12 @@ License: LGPL-3+ it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - . + . This package is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. - . + . You should have received a copy of the GNU Lesser General Public License along with this program. If not, see <http://www.gnu.org/licenses/>. . ===================================== debian/librostlab-blast0-dev.examples ===================================== @@ -1,2 +1 @@ -examples/parseblast.cpp -examples/converged.ali +usr/share/doc/librostlab-blast/examples/* ===================================== debian/rules ===================================== @@ -17,6 +17,7 @@ override_dh_install: --v5 \ --movedev debian/tmp/usr/include/* usr/include \ debian/tmp/usr/lib/*/*.so + find debian -name "lib*.la" -delete override_dh_auto_configure: dh_auto_configure -- --enable-doxygen-dot --enable-doxygen-pdf=No ===================================== debian/salsa-ci.yml ===================================== @@ -0,0 +1,4 @@ +--- +include: + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml ===================================== debian/tests/installation-test ===================================== @@ -6,12 +6,12 @@ set -e pkg=librostlab-blast0-dev -if [ "$ADTTMP" = "" ] ; then - ADTTMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX) - trap "rm -rf $ADTTMP" 0 INT QUIT ABRT PIPE TERM +if [ "$AUTOPKGTEST_TMP" = "" ] ; then + AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX) + trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM fi -cd $ADTTMP +cd $AUTOPKGTEST_TMP cp -a /usr/share/doc/${pkg}/examples/* . find . -type f -name "*.gz" -exec gunzip \{\} \; ===================================== debian/upstream/metadata ===================================== @@ -0,0 +1,2 @@ +--- +Bug-Submit: https://rostlab.org/cgi-bin/bugzilla3/enter_bug.cgi?product=librostlab-blast View it on GitLab: https://salsa.debian.org/med-team/librostlab-blast/-/compare/eb2f017790bc2a94feca45ab81c4bbb90d4e2b5c...ba910fcfeeefefe05480533d46b5f490ecace13f -- View it on GitLab: https://salsa.debian.org/med-team/librostlab-blast/-/compare/eb2f017790bc2a94feca45ab81c4bbb90d4e2b5c...ba910fcfeeefefe05480533d46b5f490ecace13f You're receiving this email because of your account on salsa.debian.org.
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