Andreas Tille pushed to branch master at Debian Med / picard-tools
Commits: 154b67c7 by Andreas Tille at 2021-01-27T18:07:24+01:00 routine-update: New upstream version - - - - - 83ec790b by Andreas Tille at 2021-01-27T18:07:26+01:00 New upstream version 2.24.1+dfsg - - - - - 1911b232 by Andreas Tille at 2021-01-27T18:08:04+01:00 Update upstream source from tag 'upstream/2.24.1+dfsg' Update to upstream version '2.24.1+dfsg' with Debian dir dcb3c3ed688b4deeef1a0276df0c6dad854b002a - - - - - 3 changed files: - debian/changelog - src/main/java/picard/sam/HitsForInsert.java - + testdata/picard/indices/index_test_b.bam.bai Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,9 @@ +picard-tools (2.24.1+dfsg-1) UNRELEASED; urgency=medium + + * New upstream version + + -- Andreas Tille <[email protected]> Wed, 27 Jan 2021 18:07:24 +0100 + picard-tools (2.24.0+dfsg-1) unstable; urgency=medium * Team upload. ===================================== src/main/java/picard/sam/HitsForInsert.java ===================================== @@ -130,7 +130,9 @@ class HitsForInsert { */ public SAMRecord getFragment(final int i) { final SAMRecord samRecord = firstOfPairOrFragment.get(i); - if (samRecord.getReadPairedFlag()) throw new UnsupportedOperationException("getFragment called for paired read"); + if (samRecord.getReadPairedFlag()) { + throw new UnsupportedOperationException("getFragment called for paired read: " + samRecord.toString()); + } return samRecord; } ===================================== testdata/picard/indices/index_test_b.bam.bai ===================================== Binary files /dev/null and b/testdata/picard/indices/index_test_b.bam.bai differ View it on GitLab: https://salsa.debian.org/med-team/picard-tools/-/compare/15cff3129061670ba13b4f46baea41df1a5cd13e...1911b2326152777415200cd3d64ce51644bb1c3f -- View it on GitLab: https://salsa.debian.org/med-team/picard-tools/-/compare/15cff3129061670ba13b4f46baea41df1a5cd13e...1911b2326152777415200cd3d64ce51644bb1c3f You're receiving this email because of your account on salsa.debian.org.
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