Andreas Tille pushed to branch master at Debian Med / metastudent-data
Commits: a357d656 by Andreas Tille at 2021-02-16T09:08:44+01:00 Deactivate patch from previous upload since it creates architecture-dependent data files - - - - - c2723bb3 by Andreas Tille at 2021-02-16T09:15:23+01:00 Enforce BLASTDB version 4 format - - - - - 4f22b8d9 by Andreas Tille at 2021-02-16T09:20:41+01:00 Upload to unstable - - - - - 4 changed files: - debian/changelog - debian/patches/permit_blastdb5_data_files.patch - debian/patches/series - + debian/patches/use_blastdb_format_4.patch Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,13 @@ +metastudent-data (2.0.1-7) unstable; urgency=medium + + * Team upload + * Deactivate patch from previous upload since it creates + architecture-dependent data files (see + https://lists.debian.org/debian-med/2021/02/msg00097.html) + * Enforce BLASTDB version 4 format + + -- Andreas Tille <[email protected]> Tue, 16 Feb 2021 09:15:30 +0100 + metastudent-data (2.0.1-6) unstable; urgency=medium * Team upload. ===================================== debian/patches/permit_blastdb5_data_files.patch ===================================== @@ -1,3 +1,5 @@ +Attention: This patch is deactivated since BLASTDB version 5 format is not architecture independent + See https://lists.debian.org/debian-med/2021/02/msg00097.html Description: Enable BLASTDB version 5 format Bug-Debian: https://bugs.debian.org/981293 Author: Andreas Tille <[email protected]> ===================================== debian/patches/series ===================================== @@ -1,2 +1,3 @@ 01_formatdb_fix_prot_dbtype.patch -permit_blastdb5_data_files.patch +# permit_blastdb5_data_files.patch # see comment in patch +use_blastdb_format_4.patch ===================================== debian/patches/use_blastdb_format_4.patch ===================================== @@ -0,0 +1,19 @@ +Description: Enforce BLASTDB version 4 format + see https://lists.debian.org/debian-med/2021/02/msg00052.html + (second of the suggested options) + and https://lists.debian.org/debian-med/2021/02/msg00097.html +Bug-Debian: https://bugs.debian.org/981293 +Author: Andreas Tille <[email protected]> +Last-Update: Tue, 16 Feb 2021 09:07:36 +0100 + +--- a/Makefile.am ++++ b/Makefile.am +@@ -21,7 +21,7 @@ install-data-local: + # BLAST databases are architecture dependent and have to be installed in pkgdatadir + $(BLASTDB) : %.fasta.psq : $(srcdir)/%.fasta + mkdir -p $(dir $@) && \ +- formatdb -p T -i "$<" -n "$(@:.psq=)" && rm -f formatdb.log ++ makeblastdb -dbtype prot -in "$<" -out "$(@:.psq=)" -blastdb_version 4 + + dist-hook: + find "$(distdir)" -name .svn -o -name '*.phr' -o -name '*.pin' -o -name '*.psq' | xargs rm -rf -- View it on GitLab: https://salsa.debian.org/med-team/metastudent-data/-/compare/41ba8508ba2a8f9515961eb07dbbb8e48ed4aa73...4f22b8d9e12e7efa68ccd2be46fc2a64b208b324 -- View it on GitLab: https://salsa.debian.org/med-team/metastudent-data/-/compare/41ba8508ba2a8f9515961eb07dbbb8e48ed4aa73...4f22b8d9e12e7efa68ccd2be46fc2a64b208b324 You're receiving this email because of your account on salsa.debian.org.
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