debian-med
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2022/03/26
Add autopkgtests to package
Michael Ikwuegbu
2022/03/26
Re: [help #218346] Porting pftools to pcre2
Nilesh Patra
2022/03/26
Bug#1008304: ITP: http-nio -- http/s file system provider for Java NIO.2
Pierre Gruet
2022/03/25
RFreview&upload: Another R time series tool - Mfuzz
Steffen Möller
2022/03/24
Re: q2-composition - removed vega* from source tree
Nilesh Patra
2022/03/24
q2-composition - removed vega* from source tree
Steffen Möller
2022/03/24
Request for peer review (and upload) of r-bioc-tmixclust and two dependencies
Steffen Möller
2022/03/22
Re: ncbi-igblast - compiles so much redundant general NCBI bits - wrong source tree?
Aaron M. Ucko
2022/03/22
Re: Help needed for dipy autopkgtest
Nilesh Patra
2022/03/22
Bug#1008128: ITP: gatk-fermilite -- interface to call Heng Li's fermi-lite assembler from Java code
Pierre Gruet
2022/03/22
Help needed for dipy autopkgtest
Andreas Tille
2022/03/22
Re: ncbi-igblast - compiles so much redundant general NCBI bits - wrong source tree?
Andreas Tille
2022/03/21
Re: ncbi-igblast - compiles so much redundant general NCBI bits - wrong source tree?
Aaron M. Ucko
2022/03/21
Re: ismrmrd has cmake build issue
Mathieu Malaterre
2022/03/21
Re: ismrmrd has cmake build issue
Andreas Tille
2022/03/21
Re: ismrmrd has cmake build issue
Mathieu Malaterre
2022/03/21
ismrmrd has cmake build issue
Andreas Tille
2022/03/21
Re: ncbi-igblast - compiles so much redundant general NCBI bits - wrong source tree?
Andreas Tille
2022/03/20
Re: libzstd should not be maintained by Debian Med team - could some core team please take over (Was: libzstd 1.5.2 in Debian)
Peter Pentchev
2022/03/16
Re: Please review ncbi-vdb
Aaron M. Ucko
2022/03/16
Re: Please review ncbi-vdb
Andreas Tille
2022/03/16
Re: git push -f on pixelmed
Mathieu Malaterre
2022/03/16
Re: git push -f on pixelmed
Nilesh Patra
2022/03/16
git push -f on pixelmed
Mathieu Malaterre
2022/03/14
Re: Please review ncbi-vdb
Aaron M. Ucko
2022/03/14
Re: Please review ncbi-vdb
Andreas Tille
2022/03/14
Re: libzstd should not be maintained by Debian Med team - could some core team please take over (Was: libzstd 1.5.2 in Debian)
Andreas Tille
2022/03/14
Re: Advice needed: building new gatk-bwamem-jni against another version of bwa
Pierre Gruet
2022/03/13
Re: Advice needed: building new gatk-bwamem-jni against another version of bwa
Andrius Merkys
2022/03/13
Re: Advice needed: building new gatk-bwamem-jni against another version of bwa
Pierre Gruet
2022/03/13
Re: Advice needed: building new gatk-bwamem-jni against another version of bwa
Nilesh Patra
2022/03/13
Advice needed: building new gatk-bwamem-jni against another version of bwa
Pierre Gruet
2022/03/12
Bug#1006834: marked as done (ITP: aeonbits-owner -- API to handle application configuration through Java properties file)
Debian Bug Tracking System
2022/03/10
Re: Advice/Opinions regarding shovill
Andreas Tille
2022/03/10
Advice/Opinions regarding shovill
Nilesh Patra
2022/03/06
Bug#1006834: ITP: aeonbits-owner -- API to handle application configuration through Java properties file
Pierre Gruet
2022/02/27
Bug#1006501: marked as done (ITP: snpsift -- tool to annotate and manipulate genome variants)
Debian Bug Tracking System
2022/02/26
Re: Please review ncbi-vdb
Aaron M. Ucko
2022/02/26
Re: Acquiring Dental RVG on Linux
Karsten Hilbert
2022/02/26
Bug#1006501: ITP: snpsift -- tool to annotate and manipulate genome variants
Pierre Gruet
2022/02/25
Re: CamiTK build failed on amd64 and all
Emmanuel Promayon
2022/02/25
Please review ncbi-vdb (Was: Cmake help needed for ncbi-vdb)
Andreas Tille
2022/02/24
Re: CamiTK build failed on amd64 and all
Andreas Tille
2022/02/24
Re: CamiTK build failed on amd64 and all
Emmanuel Promayon
2022/02/24
Re: NearVANA license
Tony Travis
2022/02/24
Re: Don't understand: biomaj3-core is marked for autoremoval from testing
olivier sallou
2022/02/24
Re: Don't understand: biomaj3-core is marked for autoremoval from testing
Nilesh Patra
2022/02/24
Don't understand: biomaj3-core is marked for autoremoval from testing
olivier sallou
2022/02/24
Re: Cmake help needed for ncbi-vdb
Mathieu Malaterre
2022/02/23
Re: Cmake help needed for ncbi-vdb
Andreas Tille
2022/02/23
Re: Cmake help needed for ncbi-vdb
Mathieu Malaterre
2022/02/23
Re: Cmake help needed for ncbi-vdb
Aaron M. Ucko
2022/02/23
Re: Cmake help needed for ncbi-vdb
Andreas Tille
2022/02/22
Re: PIQUE
Andreas Tille
2022/02/22
Re: PIQUE
Nilesh Patra
2022/02/22
Re: PIQUE
Andreas Tille
2022/02/22
Re: PIQUE
Lance Lin
2022/02/22
Re: Nanolyse autopkgtest broken - could someone provide a proper fastq file?
Andreas Tille
2022/02/22
Re: Nanolyse autopkgtest broken - could someone provide a proper fastq file?
Andrius Merkys
2022/02/22
Nanolyse autopkgtest broken - could someone provide a proper fastq file?
Andreas Tille
2022/02/22
Re: libzstd should not be maintained by Debian Med team - could some core team please take over (Was: libzstd 1.5.2 in Debian)
Andreas Tille
2022/02/21
Re: Can we remove probabel?
Lennart C. Karssen
2022/02/21
Re: libzstd should not be maintained by Debian Med team - could some core team please take over (Was: libzstd 1.5.2 in Debian)
Peter Pentchev
2022/02/21
Re: Can we remove probabel?
Andreas Tille
2022/02/21
libzstd should not be maintained by Debian Med team - could some core team please take over (Was: libzstd 1.5.2 in Debian)
Andreas Tille
2022/02/21
Re: Cmake help needed for ncbi-vdb
Mathieu Malaterre
2022/02/20
Re: Can we remove probabel?
L.C. Karssen
2022/02/20
Re: PIQUE
Andreas Tille
2022/02/20
PIQUE
Tony Travis
2022/02/20
Re: Is snakemake using drmaa?
Rebecca N. Palmer
2022/02/20
Re: Autodocksuite not available at Sourceforge any more
Andreas Tille
2022/02/19
Re: Autodocksuite not available at Sourceforge any more
Andrius Merkys
2022/02/19
Autodocksuite not available at Sourceforge any more
Andreas Tille
2022/02/19
Cmake help needed for ncbi-vdb
Andreas Tille
2022/02/19
Re: Is snakemake using drmaa?
Andreas Tille
2022/02/19
FastQTL seems to be removed from sourceforge - where can we find it now?
Andreas Tille
2022/02/19
Re: Datasets to design autopkgtests for our packages
Aaron M. Ucko
2022/02/19
Re: Is snakemake using drmaa?
Rebecca N. Palmer
2022/02/19
Can we remove probabel?
Andreas Tille
2022/02/19
Is snakemake using drmaa?
Andreas Tille
2022/02/19
Bug#1004152: marked as done (ITP: malt -- sequence alignment and analysis tool to process sequencing data)
Debian Bug Tracking System
2022/02/19
Bug#996993: marked as done (ITP: biojava5-live -- Java API to biological data and applications (version 5))
Debian Bug Tracking System
2022/02/18
Re: Datasets to design autopkgtests for our packages
Pierre Gruet
2022/02/18
Re: Datasets to design autopkgtests for our packages
Andrius Merkys
2022/02/18
NearVANA license
Tony Travis
2022/02/18
Datasets to design autopkgtests for our packages
Pierre Gruet
2022/02/18
NearVANA license
Tony Travis
2022/02/18
Bug#1003782: marked as done (ITP: megan-ce -- interactive tool to explore and analyse microbiome sequencing data)
Debian Bug Tracking System
2022/02/17
Re: q2-emperor - flagged as "RFS"ed
Steffen Möller
2022/02/17
Re: q2-emperor - flagged as "RFS"ed
Nilesh Patra
2022/02/17
q2-emperor - flagged as "RFS"ed
Steffen Möller
2022/02/17
Re: Bug#997120: [Debian-med-packaging] Bug#997120:
Emmanuel Promayon
2022/02/16
Debian Med video conference tomorrow, Thursday 2022-02-17 18:00 UTC
Andreas Tille
2022/02/16
Bug#1005356: marked as done (ITP: rockhopper -- system for analyzing bacterial RNA-seq data)
Debian Bug Tracking System
2022/02/14
Re: Re: Bug#1004498: RFP: toml11 -- C++11 (or later) header-only toml parser/encoder
Lance Lin
2022/02/13
Re: Acquiring Dental RVG on Linux
Mayuresh
2022/02/13
Re: Acquiring Dental RVG on Linux
Mayuresh
2022/02/13
Aw: Re: Acquiring Dental RVG on Linux
Karsten Hilbert
2022/02/12
Re: Bug#1004498: RFP: toml11 -- C++11 (or later) header-only toml parser/encoder
Andreas Tille
2022/02/12
Re: Bug#1004498: RFP: toml11 -- C++11 (or later) header-only toml parser/encoder
Nilesh Patra
2022/02/12
Re: Acquiring Dental RVG on Linux
Mayuresh
2022/02/12
Re: Acquiring Dental RVG on Linux
Mayuresh
2022/02/12
Re: Bug#1004498: RFP: toml11 -- C++11 (or later) header-only toml parser/encoder
Andreas Tille
2022/02/12
Re: Debian Med sprint from 2022-02-18 to 2021-02-20
Tony Travis
2022/02/12
Re: Debian Med sprint from 2022-02-18 to 2021-02-20
Nilesh Patra
2022/02/12
Re: Debian Med sprint from 2022-02-18 to 2021-02-20
Tony Travis
2022/02/11
Bug#1005356: ITP: rockhopper -- system for analyzing bacterial RNA-seq data
Andreas Tille
2022/02/11
Bug#1005356: ITP: rockhopper -- system for analyzing bacterial RNA-seq data
Pierre Gruet
2022/02/11
Bug#1005356: ITP: rockhopper -- system for analyzing bacterial RNA-seq data
Andreas Tille
2022/02/11
Bug#1005356: ITP: rockhopper -- system for analyzing bacterial RNA-seq data
Pierre Gruet
2022/02/11
Re: libcifpp transition
Andrius Merkys
2022/02/11
Re: Debian Med sprint from 2022-02-18 to 2021-02-20
Lance Lin
2022/02/11
Re: Re: Bug#1004498: RFP: toml11 -- C++11 (or later) header-only toml parser/encoder
Lance Lin
2022/02/10
Re: [help #218346] Porting pftools to pcre2
Nilesh Patra
2022/02/09
Debian Med sprint from 2022-02-18 to 2021-02-20
Andreas Tille
2022/02/09
Re: packaging new upstream camitk version (was: Bug#997120:)
Emmanuel Promayon
2022/02/09
Re: packaging new upstream camitk version (was: Bug#997120:)
Andreas Tille
2022/02/09
packaging new upstream camitk version (was: Bug#997120:)
Emmanuel Promayon
2022/02/08
Re: Bug#1004498: RFP: toml11 -- C++11 (or later) header-only toml parser/encoder
Andreas Tille
2022/02/08
Re: Bug#1004498: RFP: toml11 -- C++11 (or later) header-only toml parser/encoder
Lance Lin
2022/02/08
Re: Bug#997120:
Emmanuel . Promayon
2022/02/08
Re: Bug#997120:
Andreas Tille
2022/02/07
Re: Rationale for removing binary data from debian source package
Andreas Tille
2022/02/07
does anyone know of its whereabouts? Fwd: r-bioc-progeny_1.14.0+ds-1_amd64.changes REJECTED
Steffen Möller
2022/02/07
Re: Bug#1004498: RFP: toml11 -- C++11 (or later) header-only toml parser/encoder
Andreas Tille
2022/02/07
Re: Bug#1004498: RFP: toml11 -- C++11 (or later) header-only toml parser/encoder
Andreas Tille
2022/02/07
Rationale for removing binary data from debian source package
Mathieu Malaterre
2022/02/04
Re: Bug#1004498: RFP: toml11 -- C++11 (or later) header-only toml parser/encoder
Andreas Tille
2022/02/04
Re: Bug#1004498: RFP: toml11 -- C++11 (or later) header-only toml parser/encoder
Lance Lin
2022/02/03
Re: New version of snpeff in Git (Was: snpeff_4.3t+dfsg1-1_amd64.changes REJECTED)
Pierre Gruet
2022/02/03
Re: New version of snpeff in Git (Was: snpeff_4.3t+dfsg1-1_amd64.changes REJECTED)
Andreas Tille
2022/02/03
Re: Bug#1004498: RFP: toml11 -- C++11 (or later) header-only toml parser/encoder
Andreas Tille
2022/02/03
Re: Bug#1004498: RFP: toml11 -- C++11 (or later) header-only toml parser/encoder
Nilesh Patra
2022/02/03
Re: New version of snpeff in Git (Was: snpeff_4.3t+dfsg1-1_amd64.changes REJECTED)
Pierre Gruet
2022/02/03
Re: Bug#1004498: RFP: toml11 -- C++11 (or later) header-only toml parser/encoder
Lance Lin
2022/02/03
New version of snpeff in Git (Was: snpeff_4.3t+dfsg1-1_amd64.changes REJECTED)
Andreas Tille
2022/02/02
RFS: splitting the snakemake package into main and -doc
Rebecca N. Palmer
2022/02/02
Re: Java help for king needed
Andreas Tille
2022/02/02
Re: Java help for king needed
Pierre Gruet
2022/02/02
Re: Bug#1004498: RFP: toml11 -- C++11 (or later) header-only toml parser/encoder
Nilesh Patra
2022/02/02
Re: libcifpp transition
Andrius Merkys
2022/02/02
Re: Bug#1004498: RFP: toml11 -- C++11 (or later) header-only toml parser/encoder
Lance Lin
2022/02/02
Re: libcifpp transition
Nilesh Patra
2022/02/02
Re: libcifpp transition
Nilesh Patra
2022/02/02
Please participate in Debian Med sprint (Was: 20 years of Debian Med list :-) and suggested sprint date)
Andreas Tille
2022/02/01
Debian Med video conference tomorrow, Wednesday 2022-02-02 18:00 UTC
Andreas Tille
2022/02/01
Re: Bug#1004498: RFP: toml11 -- C++11 (or later) header-only toml parser/encoder
Nilesh Patra
2022/02/01
Re: Bug#1004498: RFP: toml11 -- C++11 (or later) header-only toml parser/encoder
Lance Lin
2022/02/01
Re: Problems finding RocksDBConfig.cmake (Was: sortmerna: "/usr/bin/ld: cannot find -lpthreads")
Andreas Tille
2022/02/01
Re: Problems finding RocksDBConfig.cmake (Was: sortmerna: "/usr/bin/ld: cannot find -lpthreads")
Mathieu Malaterre
2022/02/01
Re: Problems finding RocksDBConfig.cmake (Was: sortmerna: "/usr/bin/ld: cannot find -lpthreads")
Andreas Tille
2022/02/01
Re: Problems finding RocksDBConfig.cmake (Was: sortmerna: "/usr/bin/ld: cannot find -lpthreads")
Andreas Tille
2022/02/01
Re: Problems finding RocksDBConfig.cmake (Was: sortmerna: "/usr/bin/ld: cannot find -lpthreads")
Mathieu Malaterre
2022/02/01
Re: Problems finding RocksDBConfig.cmake (Was: sortmerna: "/usr/bin/ld: cannot find -lpthreads")
Mathieu Malaterre
2022/02/01
Re: Problems finding RocksDBConfig.cmake (Was: sortmerna: "/usr/bin/ld: cannot find -lpthreads")
Andreas Tille
2022/02/01
Re: Problems finding RocksDBConfig.cmake (Was: sortmerna: "/usr/bin/ld: cannot find -lpthreads")
Mathieu Malaterre
2022/02/01
Re: Problems finding RocksDBConfig.cmake (Was: sortmerna: "/usr/bin/ld: cannot find -lpthreads")
Andreas Tille
2022/01/31
Re: libcifpp transition
Andrius Merkys
2022/01/31
Re: Problems finding RocksDBConfig.cmake (Was: sortmerna: "/usr/bin/ld: cannot find -lpthreads")
Mathieu Malaterre
2022/01/31
Re: Problems finding RocksDBConfig.cmake (Was: sortmerna: "/usr/bin/ld: cannot find -lpthreads")
Andreas Tille
2022/01/30
Re: Problems finding RocksDBConfig.cmake (Was: sortmerna: "/usr/bin/ld: cannot find -lpthreads")
Mathieu Malaterre
2022/01/30
Problems finding RocksDBConfig.cmake (Was: sortmerna: "/usr/bin/ld: cannot find -lpthreads")
Andreas Tille
2022/01/30
Re: New version of muscle contains asm statements which prevent building on non-Intel architectures
Andreas Tille
2022/01/29
Re: Java help for king needed
Andreas Tille
2022/01/29
Re: Java help for king needed
Pierre Gruet
2022/01/29
Bug#1004498: RFP: toml11 -- C++11 (or later) header-only toml parser/encoder
Thomas Koch
2022/01/28
Re: Java help for king needed
Pierre Gruet
2022/01/28
Re: Java help for king needed
Andreas Tille
2022/01/28
Re: Java help for king needed
Andreas Tille
2022/01/28
Re: Java help for king needed
pgtdebian
2022/01/28
Re: Java help for king needed
Andreas Tille
2022/01/28
Re: Java help for king needed
Nilesh Patra
2022/01/28
Java help for king needed
Andreas Tille
2022/01/28
Re: [help #218346] Porting pftools to pcre2
Nilesh Patra
2022/01/27
Test issue with new version of mothur
Andreas Tille
2022/01/26
Re: 20 years of Debian Med list :-) and suggested sprint date
Étienne Mollier
2022/01/26
Re: [help #218346] Porting pftools to pcre2
Nilesh Patra
2022/01/25
Re: routine-update adds debhelpe (Was: Sight needs to be ported to insighttoolkit5 [Fwd: sight is marked for autoremoval from testing])
Andreas Tille
2022/01/25
Re: routine-update adds debhelpe (Was: Sight needs to be ported to insighttoolkit5 [Fwd: sight is marked for autoremoval from testing])
Nilesh Patra
2022/01/25
Re: Sight needs to be ported to insighttoolkit5 [Fwd: sight is marked for autoremoval from testing]
Andreas Tille
2022/01/25
routine-update adds debhelpe (Was: Sight needs to be ported to insighttoolkit5 [Fwd: sight is marked for autoremoval from testing])
Andreas Tille
2022/01/25
Re: Sight needs to be ported to insighttoolkit5 [Fwd: sight is marked for autoremoval from testing]
Nilesh Patra
2022/01/25
Re: Sight needs to be ported to insighttoolkit5 [Fwd: sight is marked for autoremoval from testing]
Flavien Bridault
2022/01/25
Re: 20 years of Debian Med list :-) and suggested sprint date
Sascha Steinbiss
2022/01/24
Re: Sight needs to be ported to insighttoolkit5 [Fwd: sight is marked for autoremoval from testing]
Flavien Bridault
2022/01/24
Re: 20 years of Debian Med list :-) and suggested sprint date
Pierre Gruet
2022/01/24
Porting pftools to pcre2
Nilesh Patra
2022/01/24
Re: [Request for review] plast
Nilesh Patra
2022/01/24
Re: [Request for review] plast
Andreas Tille
2022/01/24
[Request for review] plast
Nilesh Patra
2022/01/24
Re: 20 years of Debian Med list :-) and suggested sprint date
Étienne Mollier
2022/01/24
Re: Sight needs to be ported to insighttoolkit5 [Fwd: sight is marked for autoremoval from testing]
Nilesh Patra
2022/01/24
Re: Sight needs to be ported to insighttoolkit5 [Fwd: sight is marked for autoremoval from testing]
Andreas Tille
2022/01/24
Re: Sight needs to be ported to insighttoolkit5 [Fwd: sight is marked for autoremoval from testing]
Flavien Bridault
2022/01/24
Re: Sight needs to be ported to insighttoolkit5 [Fwd: sight is marked for autoremoval from testing]
Andreas Tille
2022/01/24
Re: 20 years of Debian Med list :-) and suggested sprint date
Andreas Tille
2022/01/24
Re: 20 years of Debian Med list :-) and suggested sprint date
Nilesh Patra
2022/01/24
20 years of Debian Med list :-) and suggested sprint date
Andreas Tille
2022/01/24
Re: [Help] librostlab-blast fails its autopkgtest with C++ issue
Aaron M. Ucko
2022/01/24
Re: libcifpp transition
Aaron M. Ucko
Earlier messages
Later messages