debian-med

Messages by Date

2022/01/24 Re: Sight needs to be ported to insighttoolkit5 [Fwd: sight is marked for autoremoval from testing] Flavien Bridault
2022/01/24 Re: libcifpp transition Andrius Merkys
2022/01/24 Re: [Help] librostlab-blast fails its autopkgtest with C++ issue Andreas Tille
2022/01/23 Re: New version of muscle with changed options compared to previous versions [muscle_5.1-1_source.changes ACCEPTED into unstable] Andrius Merkys
2022/01/23 Re: [Help] librostlab-blast fails its autopkgtest with C++ issue Aaron M. Ucko
2022/01/22 Re: [Help] librostlab-blast fails its autopkgtest with C++ issue Andreas Tille
2022/01/22 Re: [Help] librostlab-blast fails its autopkgtest with C++ issue Aaron M. Ucko
2022/01/22 Re: Segmentation fault in autopkgtest of new version of spaln Andreas Tille
2022/01/22 Re: snpeff_4.3t+dfsg1-1_amd64.changes REJECTED Pierre Gruet
2022/01/22 Re: snpeff_4.3t+dfsg1-1_amd64.changes REJECTED Andreas Tille
2022/01/22 Re: snpeff_4.3t+dfsg1-1_amd64.changes REJECTED Pierre Gruet
2022/01/22 Bug#986141: marked as done (ITP: snpeff -- genetic variant annotation and effect prediction toolbox) Debian Bug Tracking System
2022/01/22 Re: I always forget how to fix 'cannot find -lpthreads' (Was: vcflib new release) Nilesh Patra
2022/01/22 Segmentation fault in autopkgtest of new version of spaln Andreas Tille
2022/01/22 I always forget how to fix 'cannot find -lpthreads' (Was: vcflib new release) Andreas Tille
2022/01/22 vcflib new release Pjotr Prins
2022/01/21 [Help] librostlab-blast fails its autopkgtest with C++ issue Andreas Tille
2022/01/21 Re: Bug#1004152: ITP: malt -- sequence alignment and analysis tool to process sequencing data Andreas Tille
2022/01/21 Bug#1004152: ITP: malt -- sequence alignment and analysis tool to process sequencing data Pierre Gruet
2022/01/21 Re: New version of muscle contains asm statements which prevent building on non-Intel architectures Mathieu Malaterre
2022/01/21 New version of muscle contains asm statements which prevent building on non-Intel architectures Andreas Tille
2022/01/21 Re: [Help] Any idea how to patch cmake code of terraphast properly to get shared libraries Aaron M. Ucko
2022/01/21 Snap-aligner: Autopkgtest does not reproduce results from version 1.0.0 Andreas Tille
2022/01/21 Re: [Help] Any idea how to patch cmake code of terraphast properly to get shared libraries Andreas Tille
2022/01/21 Re: [Help] Any idea how to patch cmake code of terraphast properly to get shared libraries Aaron M. Ucko
2022/01/21 Re: sambamba and freebayes new releases Andreas Tille
2022/01/21 Re: sambamba and freebayes new releases Steffen Möller
2022/01/21 Re: sambamba and freebayes new releases Andreas Tille
2022/01/21 sambamba and freebayes new releases Pjotr Prins
2022/01/21 Re: Sight needs to be ported to insighttoolkit5 [Fwd: sight is marked for autoremoval from testing] Andreas Tille
2022/01/21 [Help] Any idea how to patch cmake code of terraphast properly to get shared libraries Andreas Tille
2022/01/21 Re: Sight needs to be ported to insighttoolkit5 [Fwd: sight is marked for autoremoval from testing] Flavien Bridault
2022/01/20 Re: Sight needs to be ported to insighttoolkit5 [Fwd: sight is marked for autoremoval from testing] Andreas Tille
2022/01/20 Re: Sight needs to be ported to insighttoolkit5 [Fwd: sight is marked for autoremoval from testing] Flavien Bridault
2022/01/18 Re: Any idea how to fix this C++ code in diann Nilesh Patra
2022/01/18 Re: Any idea how to fix this C++ code in diann Andreas Tille
2022/01/18 Re: Any idea how to fix this C++ code in diann Aaron M. Ucko
2022/01/18 Any idea how to fix this C++ code in diann Andreas Tille
2022/01/17 Re: New version of muscle with changed options compared to previous versions [muscle_5.1-1_source.changes ACCEPTED into unstable] Andreas Tille
2022/01/17 Re: New version of muscle with changed options compared to previous versions [muscle_5.1-1_source.changes ACCEPTED into unstable] Andrius Merkys
2022/01/17 Re: Any idea how to deal with multiple definitions in new version of genometester? Aaron M. Ucko
2022/01/17 New version of muscle with changed options compared to previous versions [muscle_5.1-1_source.changes ACCEPTED into unstable] Andreas Tille
2022/01/17 Re: Updating camitk Andreas Tille
2022/01/17 Updating camitk Andreas Tille
2022/01/17 Re: [Help] Autopkgtest of idseq-bench Nilesh Patra
2022/01/16 Re: [Help] intake faile dh_auto_test Andreas Tille
2022/01/16 Re: Any idea how to deal with multiple definitions in new version of genometester? Andreas Tille
2022/01/16 Re: Any idea how to deal with multiple definitions in new version of genometester? Aaron M. Ucko
2022/01/16 Re: [Help] intake faile dh_auto_test Étienne Mollier
2022/01/16 [Help] intake faile dh_auto_test Andreas Tille
2022/01/16 [Help] Autopkgtest of idseq-bench Andreas Tille
2022/01/16 Any idea how to deal with multiple definitions in new version of genometester? Andreas Tille
2022/01/16 Debian Med video conference tomorrow, Monday 2022-01-17 18:00 UTC Andreas Tille
2022/01/16 libcifpp transition Andrius Merkys
2022/01/15 Bug#1003782: ITP: megan-ce -- interactive tool to explore and analyse microbiome sequencing data Pierre Gruet
2022/01/15 Re: Help needed to build plastimatch Andreas Tille
2022/01/15 Re: Help needed to build plastimatch Nilesh Patra
2022/01/15 Re: Help needed to build plastimatch Nilesh Patra
2022/01/15 Re: Help needed to build plastimatch Mathieu Malaterre
2022/01/15 Help needed to build plastimatch Andreas Tille
2022/01/14 Re: Fwd: [Debian-med-packaging] Bug#1003314: orthanc package: startlimitburst too low Sébastien Jodogne
2022/01/14 Re: Fwd: [Debian-med-packaging] Bug#1003314: orthanc package: startlimitburst too low Aaron M. Ucko
2022/01/13 Fwd: [Debian-med-packaging] Bug#1003314: orthanc package: startlimitburst too low Sébastien Jodogne
2022/01/12 Re: Sight needs to be ported to insighttoolkit5 [Fwd: sight is marked for autoremoval from testing] Flavien Bridault
2022/01/12 Sight needs to be ported to insighttoolkit5 [Fwd: sight is marked for autoremoval from testing] Andreas Tille
2022/01/10 Closing bug (Was: Bug#984063: itk libtiff test issues (Was: Bug#984063)) Andreas Tille
2022/01/10 Re: Bug#984063: itk libtiff test issues (Was: Bug#984063) Adrian Bunk
2022/01/05 Re: Acquiring Dental RVG on Linux Karsten Hilbert
2022/01/04 Re: salsa CI job fails during "uploading artifacts" Nilesh Patra
2022/01/04 Re: salsa CI job fails during "uploading artifacts" Steven Robbins
2022/01/03 Re: salsa CI job fails during "uploading artifacts" Nilesh Patra
2022/01/03 salsa CI job fails during "uploading artifacts" Steven Robbins
2022/01/03 Re: Acquiring Dental RVG on Linux Jakub Wilk
2022/01/01 Debian Med video conference tomorrow, Sunday 2022-01-02 18:00 UTC Andreas Tille
2022/01/01 Re: [Bug 1956094] Re: deborphan guess-work removes too many files Andreas Tille
2022/01/01 Re: bart-cuda fails its autopkgtest (Was: Re: bart: version 0.7.00) Uecker, Martin
2022/01/01 Re: bart-cuda fails its autopkgtest (Was: Re: bart: version 0.7.00) Uecker, Martin
2022/01/01 Re: [Bug 1956094] Re: deborphan guess-work removes too many files Tony Travis
2021/12/31 Re: [Bug 1956094] Re: deborphan guess-work removes too many files Andreas Tille
2021/12/31 Re: Please upload htcondor to take over maintenance of Debian HPC Team (Was: Moving htcondor to Debian Med and trying to upgrade) Andreas Tille
2021/12/31 Re: bart-cuda fails its autopkgtest (Was: Re: bart: version 0.7.00) Nilesh Patra
2021/12/31 Re: bart-cuda fails its autopkgtest (Was: Re: bart: version 0.7.00) Nilesh Patra
2021/12/31 Re: bart-cuda fails its autopkgtest (Was: Re: bart: version 0.7.00) Uecker, Martin
2021/12/31 Re: [Bug 1956094] Re: deborphan guess-work removes too many files Tony Travis
2021/12/31 bart-cuda fails its autopkgtest (Was: Re: bart: version 0.7.00) Nilesh Patra
2021/12/30 Re: [Help needed] Racon Andreas Tille
2021/12/30 Re: bart: version 0.7.00 Nilesh Patra
2021/12/30 Re: damapper update - elf issue Nilesh Patra
2021/12/30 damapper update - elf issue Shayan Doust
2021/12/30 Re: bart: version 0.7.00 Uecker, Martin
2021/12/30 Re: RFS: andi and phylonium Fabian Klötzl
2021/12/30 Re: [Help needed] Racon tony mancill
2021/12/30 Re: RFS: andi and phylonium Nilesh Patra
2021/12/30 Re: RFS: andi and phylonium Andreas Tille
2021/12/30 RFS: andi and phylonium Fabian Klötzl
2021/12/30 Re: bart: version 0.7.00 Andreas Tille
2021/12/30 Re: bart: version 0.7.00 Nilesh Patra
2021/12/29 Re: bart: version 0.7.00 Uecker, Martin
2021/12/29 Re: [Help needed] Racon Nilesh Patra
2021/12/29 Re: [Help needed] Racon tony mancill
2021/12/29 Re: [Fwd: Bug#1001916: src:bart-view: fails to migrate to testing for too long: FTBFS on armel and s390x] Martin Uecker
2021/12/29 Re: [Fwd: Bug#1001916: src:bart-view: fails to migrate to testing for too long: FTBFS on armel and s390x] Nilesh Patra
2021/12/29 Re: [Fwd: Bug#1001916: src:bart-view: fails to migrate to testing for too long: FTBFS on armel and s390x] Martin Uecker
2021/12/29 Re: [Fwd: Bug#1001916: src:bart-view: fails to migrate to testing for too long: FTBFS on armel and s390x] Martin Uecker
2021/12/28 Re: [Fwd: Bug#1001916: src:bart-view: fails to migrate to testing for too long: FTBFS on armel and s390x] Nilesh Patra
2021/12/28 [Fwd: Bug#1001916: src:bart-view: fails to migrate to testing for too long: FTBFS on armel and s390x] Martin Uecker
2021/12/28 Please upload htcondor to take over maintenance of Debian HPC Team (Was: Moving htcondor to Debian Med and trying to upgrade) Andreas Tille
2021/12/27 Re: Identity Theft rhkramer
2021/12/27 Re: Acquiring Dental RVG on Linux Karsten Hilbert
2021/12/26 Aw: Re: [[email protected]: Re: Acquiring Dental RVG on Linux] Karsten Hilbert
2021/12/26 Aw: Re: [[email protected]: Re: Acquiring Dental RVG on Linux] Karsten Hilbert
2021/12/26 Aw: Re: [[email protected]: Re: Acquiring Dental RVG on Linux] Karsten Hilbert
2021/12/26 Re: [[email protected]: Re: Acquiring Dental RVG on Linux] rhkramer
2021/12/26 Re: [[email protected]: Re: Acquiring Dental RVG on Linux] Mayuresh
2021/12/24 Re: [Help needed] Racon tony mancill
2021/12/24 Re: [Advent bug squashing] Bug#989014: marked as done (vcflib: executables in scripts/* are not packaged) Nilesh Patra
2021/12/24 Re: [Advent bug squashing] Pierre Gruet fixed: Bug#1002155: marked as done (libgoby-java: FTBFS: [WARNING] /<<PKGBUILDDIR>>/goby-io/../goby-distribution/src/main/java/org/campagnelab/goby/modes/FastaToCompactMode.java:23: error: package edu.rit.pj does not exist)] Pierre Gruet
2021/12/24 [Advent bug squashing] Bug#989014: marked as done (vcflib: executables in scripts/* are not packaged) Andreas Tille
2021/12/24 [[email protected]: Re: Acquiring Dental RVG on Linux] Karsten Hilbert
2021/12/23 [Advent bug squashing] Bug#919052: marked as done (python-pbcore: some docs for pbcore are not found) Andreas Tille
2021/12/23 Re: [Advent bug squashing] Pierre Gruet fixed: Bug#1002155: marked as done (libgoby-java: FTBFS: [WARNING] /<<PKGBUILDDIR>>/goby-io/../goby-distribution/src/main/java/org/campagnelab/goby/modes/FastaToCompactMode.java:23: error: package edu.rit.pj does not exist)] Andreas Tille
2021/12/23 Re: [Advent bug squashing] Pierre Gruet fixed: Bug#1002155: marked as done (libgoby-java: FTBFS: [WARNING] /<<PKGBUILDDIR>>/goby-io/../goby-distribution/src/main/java/org/campagnelab/goby/modes/FastaToCompactMode.java:23: error: package edu.rit.pj does not exist)] Pierre Gruet
2021/12/23 [Advent bug squashing] Pierre Gruet fixed: Bug#1002155: marked as done (libgoby-java: FTBFS: [WARNING] /<<PKGBUILDDIR>>/goby-io/../goby-distribution/src/main/java/org/campagnelab/goby/modes/FastaToCompactMode.java:23: error: package edu.rit.pj does not exist)] Andreas Tille
2021/12/23 Re: python-pbcore: some docs for pbcore are not found Nilesh Patra
2021/12/23 [Advent bug squashing] Re: FTBFS: error: package org.testng does not exist Andreas Tille
2021/12/23 Re: python-pbcore: some docs for pbcore are not found Andreas Tille
2021/12/23 Re: Somehow some dh_auto_test of Python3 packages insist to install wheel via pip Nilesh Patra
2021/12/23 Re: Somehow some dh_auto_test of Python3 packages insist to install wheel via pip Andrius Merkys
2021/12/23 Re: Somehow some dh_auto_test of Python3 packages insist to install wheel via pip Andreas Tille
2021/12/23 Re: Somehow some dh_auto_test of Python3 packages insist to install wheel via pip Andrius Merkys
2021/12/23 [Advent bug squashing] Thanks to Olivier Sallou: Bug#982036: marked as done (emboss: FTBFS with OpenJDK 17 due to com.sun.net.ssl removal)] Andreas Tille
2021/12/23 Somehow some dh_auto_test of Python3 packages insist to install wheel via pip Andreas Tille
2021/12/22 [Advent bug squashing] Bug#1002365: marked as done (pynn: FTBFS: dh_auto_test: error: pybuild --test --test-nose -i python{version} -p "3.10 3.9" returned exit code 13) Étienne Mollier
2021/12/22 Re: libgoby-java: FTBFS: [WARNING] /<<PKGBUILDDIR>>/goby-io/../goby-distribution/src/main/java/org/campagnelab/goby/modes/FastaToCompactMode.java:23: error: package edu.rit.pj does not exist Andreas Tille
2021/12/22 Re: libgoby-java: FTBFS: [WARNING] /<<PKGBUILDDIR>>/goby-io/../goby-distribution/src/main/java/org/campagnelab/goby/modes/FastaToCompactMode.java:23: error: package edu.rit.pj does not exist Pierre Gruet
2021/12/22 [Advent bug squashing] Thanks to Nilesh Patra: Bug#1002355: marked as done (hdmf: FTBFS: dh_auto_test: error: pybuild --test -i python{version} -p "3.10 3.9" returned exit code 13)] Andreas Tille
2021/12/22 [Advent bug squashing] Thanks again to Julien Lamy: Bug#1002203: marked as done (mrtrix3: FTBFS: ./core/types.h:326:49: error: ‘using Vector3 = class Eigen::Matrix<double, 3, 1>’ redeclared as different kind of entity)] Andreas Tille
2021/12/22 Re: RF peer review: r-other-ibi-disgenet2r freshly injected into salsa Steffen Möller
2021/12/22 Re: [[email protected]: Bug#1002203: mrtrix3: FTBFS: ./core/types.h:326:49: error: ‘using Vector3 = class Eigen::Matrix<double, 3, 1>’ redeclared as different kind of entity] Nilesh Patra
2021/12/22 Re: [[email protected]: Bug#1002203: mrtrix3: FTBFS: ./core/types.h:326:49: error: ‘using Vector3 = class Eigen::Matrix<double, 3, 1>’ redeclared as different kind of entity] Andreas Tille
2021/12/22 Re: Re: autopkgtest requiring large data sets (pique, hinge) Nilesh Patra
2021/12/22 Re: Re: autopkgtest requiring large data sets (pique, hinge) Lance Lin
2021/12/22 Re: [[email protected]: Bug#1002203: mrtrix3: FTBFS: ./core/types.h:326:49: error: ‘using Vector3 = class Eigen::Matrix<double, 3, 1>’ redeclared as different kind of entity] Julien Lamy
2021/12/22 Re: RF peer review: r-other-ibi-disgenet2r freshly injected into salsa Andreas Tille
2021/12/22 RF peer review: r-other-ibi-disgenet2r freshly injected into salsa Steffen Möller
2021/12/22 [Advent bug squashing] Thanks to Julien Lamy: Bug#1002134: odil: FTBFS: Value.cpp:269:69: error: wrong number of template arguments (4, should be at least 5) Andreas Tille
2021/12/22 [Advent bug squashing] Bug#1002236: marked as done (conda-package-handling: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.9 returned exit code 13)] Andreas Tille
2021/12/22 [Advent bug squashing] Bug#1002230: marked as done (Ocaml build error: expression was expected of type) Andreas Tille
2021/12/22 [Advent bug squashing] Bug#1002217: marked as done (gatb-core: FTBFS: dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols file: see diff output below)] Andreas Tille
2021/12/22 [[email protected]: Bug#1002203: mrtrix3: FTBFS: ./core/types.h:326:49: error: ‘using Vector3 = class Eigen::Matrix<double, 3, 1>’ redeclared as different kind of entity] Andreas Tille
2021/12/21 [Advent bug squashing] Bug#1002253: marked as done Andreas Tille
2021/12/21 Re: Help with possibly broken ar archive Andreas Tille
2021/12/21 Re: Help with possibly broken ar archive Aaron M. Ucko
2021/12/21 Re: autopkgtest requiring large data sets (pique, hinge) Tony Travis
2021/12/21 Re: autopkgtest requiring large data sets (pique, hinge) Tony Travis
2021/12/21 Re: autopkgtest requiring large data sets (pique, hinge) Steven Robbins
2021/12/21 Help with possibly broken ar archive (Was: Bug#1002253: libatomic-queue: FTBFS: dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols file: see diff output below) Andreas Tille
2021/12/21 Re: [Help needed] Racon Nilesh Patra
2021/12/21 Re: RFS: r-cran-sparql - dependency for a more typical Med package Andreas Tille
2021/12/21 Re: autopkgtest requiring large data sets (pique, hinge) Nilesh Patra
2021/12/21 [Advent bug squashing] By Lance Lin: Bug#986201: marked as done (fsm-lite: Please provide autopkgtest) Andreas Tille
2021/12/21 Re: autopkgtest requiring large data sets (pique, hinge) Pierre Gruet
2021/12/21 RFS: r-cran-sparql - dependency for a more typical Med package Steffen Möller
2021/12/21 autopkgtest requiring large data sets (pique, hinge) Lance Lin
2021/12/21 Re: Moving python-bioblend to med-team? Steffen Möller
2021/12/21 Re: Acquiring Dental RVG on Linux Mayuresh
2021/12/21 Re: Acquiring Dental RVG on Linux Andreas Tille
2021/12/20 [Advent bug squashing] Bug#995831: marked as done (find_package(charls 2.2.0 REQUIRED) not working) Andreas Tille
2021/12/20 Acquiring Dental RVG on Linux Mayuresh
2021/12/20 [Advent bug squashing] 982383 Done: Confusing patch description Andreas Tille
2021/12/20 [Advent bug squashing] Bug#994286: marked as done (r-bioc-destiny: Orphaned upstream, marked for removal in next BioConductor release) Andreas Tille
2021/12/19 Re: [Help needed] Racon Nilesh Patra
2021/12/19 Re: [Help needed] Racon tony mancill
2021/12/19 Re: [Help needed] Racon Andreas Tille
2021/12/19 [Help needed] Racon Nilesh Patra
2021/12/19 [Advent bug squashing] Bug#1001932: marked as done (smart-open: FTBFS with dpkg-buildpackage -nc/--no-pre-clean) Nilesh Patra
2021/12/19 [Advent bug squashing] Bug#1000224: marked as done (plastimatch: DCMTK was configured to use C++14 features, but your compiler does not or was not configured to provide them.)] Andreas Tille
2021/12/19 Re: Moving python-bioblend to med-team? Andreas Tille
2021/12/19 Moving python-bioblend to med-team? Nilesh Patra
2021/12/18 [Advent bug squashing] Bug#1001657: marked as done (ball: binary-any FTBFS) Andreas Tille
2021/12/18 Re: Scala error when trying to build latest version of pilon Pierre Gruet
2021/12/17 Re: Scala error when trying to build latest version of pilon Andreas Tille
2021/12/17 Re: Scala error when trying to build latest version of pilon Pierre Gruet
2021/12/17 [Advent bug squashing] Bug#977033: marked as done (parallel: Multiple threads on multiple hosts with same home directory fails) Andreas Tille
2021/12/16 Re: Debian Med video conference tomorrow, Friday 2021-12-17 18:00 UTC Andreas Tille
2021/12/16 [Advent bug squashing] Bug#1001614: marked as done (odil: FTBFS on armhf: 91 - MoveSCU_Move (Failed)) Andreas Tille
2021/12/16 [Advent bug squashing] Bug#987287: marked as done (python-bz2file: no longer useful since Python 3.3) Andreas Tille
2021/12/15 [Advent bug squashing] Fwd: Bug#1001681: marked as done (sight: FTBFS in unstable) Pierre Gruet
2021/12/15 [Advent bug squashing] Bug#929700: marked as done (pymol: Deprecation warning during startup) Andreas Tille
2021/12/14 [Advent bug squashing] Bug#935340: marked as done (obitools: Port to Python3 needed) Andreas Tille
2021/12/13 Re: [Advent bug squashing] Bug#988852: marked as done (transdecoder: broken symlink: /usr/lib/transdecoder/util/__pwm_tests/pasa_assemblies.fasta.gz -> ../../sample_data/pasa_example/pasa_assemblies.fasta.gz) Andreas Tille
2021/12/13 Re: emboss: FTBFS with OpenJDK 17 due to com.sun.net.ssl removal Andreas Tille
2021/12/13 Re: emboss: FTBFS with OpenJDK 17 due to com.sun.net.ssl removal olivier sallou
2021/12/13 Re: emboss: FTBFS with OpenJDK 17 due to com.sun.net.ssl removal Peter Rice
2021/12/13 [Advent bug squashing]: Bug#985071: marked as done (smalt: native FTBFS with DEB_BUILD_OPTIONS=nocheck) Andreas Tille
2021/12/13 Re: emboss: FTBFS with OpenJDK 17 due to com.sun.net.ssl removal olivier sallou
2021/12/13 Re: emboss: FTBFS with OpenJDK 17 due to com.sun.net.ssl removal Andrius Merkys
2021/12/13 Re: emboss: FTBFS with OpenJDK 17 due to com.sun.net.ssl removal Andreas Tille
2021/12/13 Re: r-bioc-txdb.hsapiens.ucsc.hg19.knowngene on salsa Re: please kindly review: r-bioc-fishpond -- Fishpond: differential transcript and gene expression with Andreas Tille
2021/12/13 r-bioc-txdb.hsapiens.ucsc.hg19.knowngene on salsa Re: please kindly review: r-bioc-fishpond -- Fishpond: differential transcript and gene expression with Steffen Möller