I forgot the have the list own this when I sent this ITP out. The packags is at git://git.debian.org/debian-med/sga.git with upstream in master and the package in debian.
Feedback is welcome. What is the next step to get bamtools and sga into Debian \ BioLinux \ Ubuntu etc..? ---------- Forwarded message ---------- From: Michael Crusoe <[email protected]> Date: Sun, Nov 4, 2012 at 7:20 PM Subject: Bug#692332: ITP: sga -- A de novo genome assembler based on the concept of string graphs. The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads. To: Debian Bug Tracking System <[email protected]> Package: wnpp Severity: wishlist Owner: "Michael R. Crusoe" <[email protected]> * Package name : sga Version : 0.9.35 Upstream Author : Jared Simpson <[email protected]> * URL : https://github.com/jts/sga * License : GPLv3 Programming Lang: C++ Description : A de novo genome assembler based on the concept of string graphs. The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads. SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads. The core algorithms are described in this paper: http://bioinformatics.oxfordjournals.org/cgi/content/abstract/26/12/i367 -- To UNSUBSCRIBE, email to [email protected] with a subject of "unsubscribe". Trouble? Contact [email protected] Archive: http://lists.debian.org/CAD=wrc+rm0v+m_lzw7j1vfryzm3_ot2vyfca_uw4wv5pxjp...@mail.gmail.com
